Array 1 51387-50819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADUCQ010000026.1 Pseudomonas citronellolis strain PSB00011 PSB00011_c0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51386 28 96.4 32 .....A...................... CTGATGCCGTACTGGTTCGCCGCCAGCGGCCG 51326 28 96.4 32 .....A...................... TGGGAGGGAAGGTCCTAGTCAGCGCCGCATCG 51266 28 96.4 32 ............A............... TACTACTGGTCGAGCACGCAGCGCTCCGCCAA 51206 28 96.4 32 ............A............... TTGCGCGCCTGGATATCGGCGTAGGCCTCGAT 51146 28 100.0 32 ............................ AAACAGATGGGGCATAAGGATTTCACGATGCT 51086 28 100.0 33 ............................ CAGTAGTCGAACGGTAGGTCAGCCCCGTCCTGG 51025 28 100.0 32 ............................ ATCAGCCAGATACAGCGCAGAGTCAATTCGTT 50965 28 100.0 32 ............................ AACCTGCGCGGCGCCTACCTGGGCGGCGCCAA 50905 28 89.3 32 ............A.....C........G TTCGCGCTCAAAAAGTACCGCGGCGGGATCGA 50845 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 32 CTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGCGCTGGATTCGTTGATGGCTCAACCCTGGTTATCCGGCATGCGCGACCACCTGCGCCTGGGCGAACTGCTGCCGGTTCCCGAGGGGGCGCAGCATCGCCAGGTCCGCCGCGTGCAGGCCAAGAGCAACCCGGAGCGCCTGCGGCGGCGGCAGATGCGCCGCCATGGTTTCAGCGAAGAAGAAGCCAGGCAACGCATTCCCGACAGCGCCGCCCGCCGGCTCGACTTGCCCTACGTCCGGTTGCGCAGTCAGAGCAGTGGGCAGCACTTTCGTCTGTTCATCCACCACGGCCCTTTGCAGAGCCAACCGGTGGCCGGGCACATCAACCGCTATGGGCTGAGCGATGGGTGTACTGTTCCCTGGTTCTGACCCTTTTTTCCGGGGCATTCTGTACATCTTGGAAAATCAGTCACTTACAAGGGCCGTCGAAAAAAGGGATAGATGAGCTTAATGGCTGGTTTTCCTTTTAGCCACAACGAGTTGGGAGCTTGAGCCTCTA # Right flank : GCACCGGACACTCGGAAGAGCATTCCTGCGCGCCTCATTGCCGTACAAACAGACCGGCGCCCAGTCGTCTCCGCGCCGCCTGTTGCCTTATTCGGCATAGCCCTCGGCGATGTGCTGGTCCTTCAGCTTCACGTAGTTGCCGGCCGTATAGGCGAAGAAGGACCTTTCCTTGTCGCTCAGCGGGCGGGCCTTCTTCGCCGGGCTGCCGACGTAGAGGAAGCCGCTCTCCAGCACCTTGCCCGGCGGCACCAGGCTGCCGGCGCCGAGGATGACTTCGTCCTCTATCACCGCGCCGTCCATGACGATGCAGCCCATGCCCACCAGCACGCGGTTGCCGACGCTGCAGCCGTGCAGCAGGACCTTGTGGCCGACGGTCACTTCGTCGCCGATGGTCAGCGGGAAGCCGTCGGGGTTGTAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGGATGCTGGTCCGGTTGCCGATGCGGATGCGGTGCATGTCGCCGC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : CTTCAATGCCGTGTAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 60452-60004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADUCQ010000026.1 Pseudomonas citronellolis strain PSB00011 PSB00011_c0026, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 60451 28 96.4 32 .........T.................. CAGTAGCTCGGAAAAAGCCAGGGCGTTGAGGA 60391 28 96.4 32 .........T.................. AAGCAGCTGCTGGGCGAGGACAGTGTCGAGGA 60331 28 96.4 32 .........T.................. ACCTTGCCGCCGGGCCGCCCAGAGTCGAACAC 60271 28 100.0 32 ............................ TTGTGCGGCAGTATTCGAAATTGCAGTAGCTC 60211 28 100.0 32 ............................ GCATAACCCAACCCCATTCCACCATCGCCGGC 60151 28 100.0 32 ............................ ATCACCATCGACCTGACCAAGGCCGCCCAAGT 60091 28 92.9 32 ............G........G...... TGCGAGGGCGGACTAAATGACCGCCAAGGCCC 60031 28 71.4 0 ..........A.........T.CTTCCC | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.2 32 CTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCGCCAGCAACTCGCCGACGCCGTCGAACACCCGGTTCTCGTACAACCCGGTGTCCTTGAAGCGCATCCGGTAATGGTTCACCGCCTCCCAGGCCCGCGCCTCGTCGAAGCCATAGGTGCTCATGAAGCACTGCAGCAGCGGCGGGCCGATGAAGTGTTCGAGCCGGCGCAGGTCCGGCTCGTCGATGCCCAACTGCGCCAGGGCATACTGGATCGAACGGGTGATGCCCTCGCGCGGGTCGGTGAGGGTGCCGTCGAGGTCGAAGAGGATGTTCTGGTAGTGCATGGGCAAGGCTGCGACAGGAAGAATCGAACCGGAAGCATACAACTGGCCTCCGTACCGACCAAACGCCCATGCAATGACTTCCTGCCCTTTTTCTGGAGCCTCTTGCGAGTCCCATGAAAATCAATGGTTTGGAGAGGCCCCTGAAAAAAGGGTTATGCGTGTGTATAGGGTGCTTTCTCGTGGGAAGTCAGGGGGGTGAGGAGTAACATCTCTA # Right flank : ATGCCAGGCAGTCAAGCAAACCTCCATCATTCCCTTCCCCCGCATGCAGCAGTAGCATCGCGCAATCATCCCGCTTCGGCACCCGCGACCATGGACGAGTTCGCCCCTTCCGACCTGAAGACCATTCTCCATTCCAAGCGCGCCAACCTGTACTACCTCCAGCACTGCCGGGTACTGGTCAAGGGGGGCCGGGTGGAGTACGTCACCGATGAAGGCAAGCGTTCGCTGTACTGGAACATCCCTATCGCCAACACCACCTGCCTGCTGCTCGGCACCGGCACCTCGGTCACCCAGGCCGCCATGCGTGAGTTGGCCAGGGCCGGTGTCATGGTCGGCTTCTGCGGTGGAGGCGGGACGCCCCTGTTCAGCGCCAACGAGATGGAAGTGGAGGTCGCCTGGTTTCCGCCGCAGAGCGAATACCGACCCACGGAATACCTGCAGAACTGGGTTCGCTTCTGGTTCGACGACAGACTGCGCCTGGAAGCCGCCAAGGCTTTCCA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : CTTCACTGCTGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //