Array 1 775997-776924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015568.1 Pasteurella multocida strain USDA-ARS-USMARC-60248 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 775997 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 776057 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 776117 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 776177 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 776237 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 776297 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 776357 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 776417 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 776477 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 776537 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 776597 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 776657 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 776717 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 776777 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 776837 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 776897 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2002317-1999529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015568.1 Pasteurella multocida strain USDA-ARS-USMARC-60248 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2002316 28 100.0 32 ............................ AACCGAACGCGCTGCTTTTTCTTAATAAAACG 2002256 28 100.0 32 ............................ ACTAATAAGCTGCTTAATACCATTCACCCCTT 2002196 28 100.0 32 ............................ TAACAATCACCGCACTTTGAAAGTGCGGTGCT 2002136 28 100.0 32 ............................ CAGTACCACCGCTCGAACAGCTAGGCTTTAAT 2002076 28 100.0 32 ............................ TCACCCACAATATCTAAATAACTATTGGTTTT 2002016 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 2001956 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 2001896 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 2001836 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 2001776 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 2001716 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 2001656 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 2001596 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 2001536 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2001476 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2001416 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 2001356 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 2001296 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2001236 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2001176 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 2001116 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 2001056 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 2000996 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 2000936 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 2000876 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 2000816 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 2000756 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 2000695 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 2000635 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 2000575 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 2000515 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 2000455 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2000395 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2000335 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2000275 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2000215 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2000155 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2000095 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2000035 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 1999975 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 1999915 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1999855 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1999795 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1999735 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1999675 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1999615 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1999555 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //