Array 1 422523-424075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTAD01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain SPAINa isolate H163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 422523 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 422584 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422645 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422706 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 422767 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 422828 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422889 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422950 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 423011 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 423072 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 423133 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 423194 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 423255 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 423316 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 423377 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 423438 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 423499 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423560 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423621 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 423682 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 423743 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423804 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423865 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423926 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423987 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 424048 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440208-440847 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTAD01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain SPAINa isolate H163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 440208 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440269 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 440330 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 440391 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 440452 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 440513 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 440574 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 440635 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 440696 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 440757 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 440818 29 96.6 0 A............................ | A [440844] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //