Array 1 95151-95979 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZZ01000002.1 Levilactobacillus brevis strain 3M004 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 95151 36 100.0 30 .................................... TTACGAATGTGATTAGCTCCAAGCCACGTG 95217 36 100.0 30 .................................... ACGCATTTCTTTGCTTAACAGGTATTTATA 95283 36 100.0 30 .................................... GATTAGCTTAGCCTTCCTGCGAATGCTCTT 95349 36 100.0 30 .................................... CAACTGCACGACCATATCGAACCCATAATT 95415 36 100.0 30 .................................... AATTTCATACGTACTTCTAACTGATATTTG 95481 36 100.0 31 .................................... CCTGTTAGTAAGTCCGCCACTACCACCCACA 95548 36 100.0 30 .................................... TTTGGCAGCCGACCTTGTGCTGCAGCTTAG 95614 36 100.0 30 .................................... TAAAACGCCATTGTGCCTTGGGAGTAGCCA 95680 36 100.0 30 .................................... AAACGGAGGTAACGAATAACGACATTCTTT 95746 36 100.0 30 .................................... ACCCACCCGTATCGGTGTAAGAACTGATAC 95812 36 100.0 30 .................................... ATGAACTGCAATCGCCATAACGATCACAAC 95878 36 100.0 30 .................................... TCGACAGTCCCGATACCTTTAGCAATGTTC 95944 36 91.7 0 ...........................A.C.....T | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.4 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCGTTATTTCAACGAAAACTGCAAACGAGGTTGTTGAAAGTCTTAGCTGATGATCAAACGGTGGGCTTAGTGGATGGGCTGCAATCATTGCTATCTCAACTATTAGCGGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTAGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGACGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATTTACCAATTCTTCTAATTGAATTTTCATCCACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTATGGTAGATTCTCAAGGTGAGATAATGGTGTGAAAATGTCG # Right flank : TACCCACTAGCAATGCTGCTAGGTGCTATGGTGTCTTACGATTTTGATAAAATGGCTCATTGATAAGCGCGAGATAACTTCTTTGGAGATATTAATGACCTTGTAAAAAATGGTCTATAGATCTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCGCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCACGTATCCTTAAATCTGTATCATCTCAATCCAATTAACCAGCGTTTAGCAACCGCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGCCAACCGCACCGCGTATGATAGAGACGATAGCTAGAATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 136936-138884 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFZZ01000003.1 Levilactobacillus brevis strain 3M004 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 136936 36 100.0 30 .................................... GTCGAACGTTGGCTTGTGACGGTCGTCAAA 137002 36 100.0 30 .................................... TAACCAGCTTTATTAAGCGCTAACCAGACA 137068 36 100.0 30 .................................... AAAAATGCGGAAAGTATGAAAGGTGACTTC 137134 36 100.0 30 .................................... CAAATCGCTAAGCTTATTCTCTAATTTCTT 137200 36 100.0 30 .................................... TTTAACCGTCTCTAATTCTTGACGCATAGC 137266 36 100.0 30 .................................... CGGTTGCTTTGCTAGTTGCTGACGTGTCAA 137332 36 100.0 30 .................................... GTCCGCCTCGCCAATAAGTGTAATGATAAT 137398 36 100.0 30 .................................... CTTTTTGATTTGAACCACGATGAACTAATT 137464 36 100.0 30 .................................... AACAGCATTAGCAATACCTTCAAGGGAATA 137530 36 100.0 30 .................................... CCGCCAATTGCACAATGGACATAACCGCTT 137596 36 100.0 30 .................................... CGAATCCATAGGCTATTTTTCATATATAAA 137662 36 100.0 30 .................................... CTATTTAGATGATGAAGAAGATCACATTGA 137728 36 100.0 30 .................................... GCGGTCTACGACGCCTACAACGCGGAAAAG 137794 36 100.0 30 .................................... ACCAAGCATCACATGGTGCTTATCTGATGA 137860 36 100.0 30 .................................... TGGTGAACTTGGCGGATGGAATGCGCTAAC 137926 36 100.0 30 .................................... GATATGATAGACGTCATCAATGCTGGGATT 137992 36 100.0 29 .................................... TTGATGGAGGCCCAAGTTGACAAGGCTAA 138057 36 100.0 30 .................................... CTGATACCATCGATCATTGGTGCAATTATT 138123 36 100.0 30 .................................... CCCTGCTCTACGTTCAACCTCGGCAATGGA 138189 36 100.0 30 .................................... AGGGTCAACGTTACACATGAGTAACGACGC 138255 36 100.0 30 .................................... CAGAAGATATCAGTGAGGGTAGCGAAGACG 138321 36 100.0 30 .................................... GGGGAGGTTGCACAAACTGTTATTAACAGC 138387 36 100.0 30 .................................... ACAGGCGGCTTAGACCCGGGCGGCCCCCTT 138453 36 100.0 30 .................................... CTACTGCCGTGATAAATTCGTAGTAGACGG 138519 36 100.0 30 .................................... TGCTCGCCAGTATAGTCATCAATCTTGTTC 138585 36 100.0 30 .................................... AGTGATGACAGCTATCCTAGAGAAACATAA 138651 36 100.0 30 .................................... CAGGCCTATTCAGCTTCGCAAAACGTGACA 138717 36 100.0 30 .................................... AGAACTTCCACAAGATAATCCTCGAGGACT 138783 36 100.0 30 .................................... GGTCGCAGTCCTCTGACATCTTTATGCGGA 138849 36 94.4 0 .C................................A. | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.8 30 GATCCTTTATACCCTAATTTGAAAGGAACTTAAAGC # Left flank : TTACCGGAGATTGTTGCATTGCGGGTACATGAGAATGGGGAATAAAAGATTTATGCGAATCATTGTGATGTTTGATCTACCAACTAAAACTAAAGATGAACGGCGAATTGCGGCCAGATTCAGACGAGATTTAATCAACTCTGGCTTCGTTATGATGCAGCTATCTGTCTACTATCGCTTGGTCAAAGGGACTGATTTGGTTCATAAGTATGAACAACGAGTCGCAGATTTTCTGCCACCAACCGGTCAGGTCCGATTGCTTGTTCTAACCGAGAAGCAATTTAGCAGTATGCAAATCATGACGGGTTCCACATCTCATCAGGAAGAAAAAATTGACAATTCAGAGTTGACAATTTTGTAACTAACGTAGTTTAAAGTAGAAAGGTTGGCAGATCTTATGCTTAGCCTTTCTTTTTTTAACTCATTTCAATTTTATGACCATTTTTATGCCAAAAAACTAGCCCACAATCACCGTAATATCAGTGATTATGGGCTAGATA # Right flank : CATTGATGAATATGGAACGACTAATATTTACCCACTTTACTTCCTTCAATCCTAACAAAAAATGTAGGAAAAACTACTTCCTACATTTTAAATCTACCTTACTTATTTTGACAGATAATCACTAGATTCTCAGAGATCAAAGTTATTAAAATCTGCAATATCCATAACAAATCTTTCTGCAGTCATACTACCAGTACTCATATTCTTAATAATCAAACGATATTCCCGTTGCTTATCATAATATTGATCCGCTAAAATGATTTGAATACTTTGCATTCGATCCTTAGCGTTTTCGGAATTACTATTAGCCAGAACCGTTACTGGTCCTGAAATCTGTTGATTCTGGTCGTTCACAAAATAAAGCTCAAACTCAGCTGGAATGACGGTTGGGCCAATTGGTGCCGATTGACGAATCACAACCGGAACCGTCAACGACGTAATCTGACGATTCATACTAAATAATTCCAGCTCGACACTCTTCGCCACCGAACGCGCCGATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCCTTTATACCCTAATTTGAAAGGAACTTAAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //