Array 1 815200-814098 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 815199 30 100.0 37 .............................. AAATTTTGTTGGATTTCAGGTTTTATAAAGGTTTCGG 815132 30 100.0 37 .............................. CTTGTCCACGAGAACGTAGTAGGAAACCTCTCCTGTG 815065 30 100.0 38 .............................. CTGATTGTCTACGCTCCAGGAGTTTTCTATACTCCCGC 814997 30 100.0 37 .............................. TTAGACGTATTTGTGGACGTGCTAACCCAGAATTCCG 814930 30 100.0 37 .............................. TAAAGAGAATCGCTAAGGAGATGGCAATTCTCAAGAA 814863 30 100.0 36 .............................. GGTAGTATTGGCCTTCAATCCCGTAACCGTTTTCTG 814797 30 100.0 36 .............................. ACGGCGACGGGGTGGACATCAACAGGGTGGGCATCA 814731 30 100.0 35 .............................. CTCCTGGTCTCTGCAATATCGAAGTAATCACAATC 814666 30 100.0 38 .............................. GGAGAAGCGAGTTTTATACCCAGACGACGGGCCATATT 814598 30 100.0 37 .............................. ATATTCCCAACAATCCCGCTCGCGGAGGAGCTGGACG 814531 30 100.0 37 .............................. GAACGGAAAAATCGTAGAAGGCATTAGCTCACCAACC 814464 30 100.0 37 .............................. ATTTAAAATCATTAGAGGCATTGGATTAGCCGACGCC 814397 30 100.0 37 .............................. ACGGGAGCCTAATTAGGGTTGCCTCGGCTTTCAGGCC 814330 30 100.0 38 .............................. GATTTCCGGGCCTTCTGTCGTGTCACTCATCTTCATCC 814262 30 100.0 37 .............................. CCCGAGGTATAGCCCAGGTCCTGGGCATAGTAGCCGA 814195 30 100.0 38 .............................. ACGACTGTATGTGTTGTTTCGGTTAGTGTTGATAATCT 814127 30 93.3 0 ..........................G..C | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.6 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GTTTGAGGTTGGGAAATTTTAACTTTTCCGATGCATCACGCTAAGAACGCCCCGATTTGGGATAGAGACTATCATAACGGAGAAAGCGCAAAAAATTCCCCCGATAATCACCGGAAAATCGACTTTCACGTATCAAAAAACTGGAACATCTTGTCACATTTTTATTGTAGAATATTCCGAATTTTCTTCAAGACGTTGAAATGTGGGCATACCTAGCCCAAATTCGCTCAATCCCTGCTCAAATCTGGCCATTTTTCATGACAGGAGATTTTATGTCAGCTTTCAAGAAATCGCTGGCACTGACACCTTGGCATTTGGCAATACATATTCCCAGGTTAATACAAACCAAGCAAAAAGATGGCATCGCCACCTTTGTAAGTGGGTTTATCTCCTCAACCACGACTAGCAAGACCCTCGAAATTGGCACCAATTTCCAGAAAGGCTTAAATATTGGGAGGTCCTCCTTCCTTTGTTGAACAAAAAGGCAAGTTTCGCACCCT # Right flank : ATCCCTGAATCAACCATGATATTTGGGGAATGCTGCAACGGAACCAGAAAAAGTACTCACTGTTTTATCAAGAACCCAAACGAGTTGTGGCGGACCGGCGGGGCTTCGAACCCCGGACCTGCGGCTTAGGAGGCCGCCGCCCTATCCTGGCTAGGCTACCGGTCCACTGCCCGCTATTCCCTCCCGGAGAAGAGTATTTAAAGTTTACGGTTTACTCTATCCGGTGAAGGGCATGGTTGACGAGCTGGACCTCAAGATAATCTCGCTCCTCCAGAAGAACGCCCGCCTCTCGTTTAGAGAGATAGCGAGGGAGCTCGACGTTGCCGTTGGCACGGTCTACAACCGAATCAAAAAACTCGAAGAGGAGGGCGTTATCAGGGGCTACACCCCCGTTCTCGACTACGAGAAGCTTGGCTTTGGACTAACGGCCCTCATTGGAATCAAGGCACAGGGAAGGAGAATAGCGGAGATAGAGCGGAAGATAGCCGAGAAAACCCGGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 1243845-1245567 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 1243845 30 100.0 35 .............................. TACCAGTTGGCTACACGCTCAACAGGGGCACCCTT 1243910 30 100.0 38 .............................. GAGATTCTTAATCCTCCTCCCATACACCGTGGCCTTTT 1243978 30 100.0 37 .............................. CTGAAGTCCTCGGCGGTTATGTAGAAAGCGAGGTAGT 1244045 30 100.0 36 .............................. ATGCCCAAAAGGTCTTTGGCTTCGTCCACCGCGCTT 1244111 30 100.0 38 .............................. TCGTCAAGGAGTCTAACAATATCCTCCAGCTTCTCAAG 1244179 30 100.0 37 .............................. CTTATTGCTTGGGCTGAGCGTATTATTGCTGATTAGG 1244246 30 100.0 37 .............................. CTGAAGAAGGGACGGGAACTTATAGAGATGATTAGGC 1244313 30 100.0 37 .............................. TCCGCCGGTTCATTACTCCCCGCCACTCACGGACGGG 1244380 30 100.0 45 .............................. GTGGGCATATGCCGGCCACAACGCTGGTCCTGGAGTAATACTTAG 1244455 30 100.0 37 .............................. AACGCTGTGAGTGAAAGCGACCCCAACAAGGTGTTCT 1244522 30 100.0 37 .............................. CACCTCCTCGTCCCCCAAGAGATCCCCCAAGAGAGAC 1244589 30 100.0 38 .............................. AAAGCGGGATAACCTCATTAACCACCGCACGCGGGAAG 1244657 30 100.0 37 .............................. CGCTCTTCGTTATGCCTTCATCTCCCACCTGACCAAA 1244724 30 100.0 37 .............................. AGGCCATTGCGCAGGCGCAGCAGACTCATCAGAACGT 1244791 30 100.0 36 .............................. GCGGTTACGTGGTTCAGGAAGCCATACCAGTTGGCT 1244857 30 100.0 39 .............................. CTTTTTTGTGTAGTTCTGGTTGAGGAAACCGTTTCCTGT 1244926 30 100.0 40 .............................. GGGTGGGACGTCTACTATTACTCCTCTCGCAATCGAACAA 1244996 30 100.0 38 .............................. CTCTGGGTAAGGTAATCTTTTGTTCCCGAGAAGTGTGG 1245064 30 100.0 36 .............................. CTTTTGGACCCTCGCGAGCCTCCTCGAAGGTGCTCC 1245130 30 100.0 39 .............................. CTTCACACGGGAACCCGTAGTTTACATAGTAGAAGAGAG 1245199 30 100.0 40 .............................. AAAGAAAACCGACGACATCACGAAAGCCGTCCGCTTAAAG 1245269 30 100.0 37 .............................. GAGAAATCTGAGGTAATGCTAATGACCGCAGTCTTAA 1245336 30 100.0 38 .............................. AGGTGAGTGCCGTTCTGAGAGTAAAAATTGAAAGTCAG 1245404 30 100.0 38 .............................. ATCCCTGATACGTGCGGCAAGTTCCCAGCGAAGGCCGG 1245472 30 93.3 36 .C.............T.............. TCGTCATAGAAGACTTTGACCTTGTAGTAGACGGTA 1245538 30 93.3 0 .C.............T.............. | ========== ====== ====== ====== ============================== ============================================= ================== 26 30 99.5 38 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : TGTTGGAGAAATATGTATGGTTTGATATAAAATCTGCCTGCACTTTCCTCCGGGCCACCACGATGAGAAAGGGCCAAGACCCGAAAGGCCCCTTTAAAAGGGAAAACTCGAAAAGAGAGAGCCAGAGGGACGGCTGGAAATCGAATTTTACAAATTCAAGAATGGGACATAATGTTTCAAATTTTCTATCAAATGTCACGAAATTTTTTCGGAAAGTGCAATAACGCCCGCAGAGCCGTTTTTTCAGGAGGAACCCCATTGAAATCCGATTATTTACTCGAATAAACGAAGAAGATGGTTTAAACAGAAATTAGAGAGATTTCTAGTGCTTGAAAATCGCAAAGGGTCCCTACAATGTGGCGTCTAAACCTGTTTCGACTTATGTGGGGGCTCCCCTTAGGTAGCGCGATGTTGCCCCGATGAGAGGATATTTCCAGAAAGGCTTAAATATTGGGAGGTCCTTCTCCTTCTGTTGGGCGAAAGAATGAATTTCGCGCCCT # Right flank : GGAGGTCGACCCCAAGTAGGTTGGTGGAGGGGTTTGAAAGGTTGCAATGAGACCTTAAAAGAACTTGGTTTGAAAAAACTAAAAGGCTGGGAGCTGTTAGCTGCTCTAGCAAGTGTTCACTGGCTGAAGCGCTCTTCGATGTATTCTCTTATGAGGTTCTTCGTCGCGAGAAGGCCCTTGACGTGCGTTCTCTCCATCCCGTGGCTCGCGTGGACGCCGGGTCCAATGAGTGCAACGCGGAAGTCCCAGCCGGCCCTTAAGGCGGCAGAGCCATCCGAGCCGTAGTAGGGAAACACGTCGACAACGTAAGGAATCCCTTTCTTCTCCGCCAGTTCGATGAGTGTTGTCGTCATCTCGTAGTCGTAGGGCCCACTCGAGTCCTTCGCCGCTATCGAGACCGCCGTTTCCTTTCCATAAACTCCTTCGCCGACGACGCCCATGTCGACGACGAGAAGCTCCCTTGTTGTTGGCGGATAGCCAGCGGAACCTCCGTGGCCGAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 1498627-1500281 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================ ================== 1498627 29 100.0 35 ............................. ACGCTCTTGGGTGTATTGTTGCCCAGGCGTCGGGG 1498691 29 100.0 48 ............................. CGTGGCTCTCTACAAGCTCCCGGGCGAGTCTGCTCCTCTTTACGTCAC 1498768 29 100.0 38 ............................. ATAGCCCGTACTGGTTCCCTGATAAGACCTACACGTAT 1498835 29 100.0 37 ............................. AGTAAGTCCGCTCGCGTCGTCTATGCTGGCGATTTTC 1498901 29 100.0 35 ............................. TGAGATGGCACGGCAGAGGGGACTTAAGACAGTCA 1498965 29 100.0 38 ............................. AGGAGATGCTTGAGCGCCTTCTCGTCCTCTATCGTCAG 1499032 29 100.0 37 ............................. TTGAGGTAACCCTTTTGGAAACGTGGGTTAGGGGCTC 1499098 29 100.0 41 ............................. TAGTCGTGCCCGGCGTATCCTTCGGCGCAACTTTGGACGCG 1499168 29 100.0 37 ............................. ACGCTCAACGCGTTTAAGGTCATCGCGTCCACCATAC 1499234 29 100.0 37 ............................. AGGAGAAACTACCCGAAGCGAACGTTACGCTAATAAA 1499300 29 100.0 42 ............................. ACTTTGCGGTTTTTTCTGGAGTGTCGAGCTCGGGGACTTCTT 1499371 29 100.0 39 ............................. GAGTCGCCCCAGCGCGGAGCGTCGAAAGGCGACCCCGCA 1499439 29 100.0 43 ............................. CAGGCTATTCTTCTCAGCACGTCCTGAGGAGTGGAGAGACGAA 1499511 29 100.0 40 ............................. CAGTGTCCATTCCCAGCTTCTGGAGGCCCAACGTCGCGTT 1499580 29 100.0 36 ............................. TGGAGTAGTCAGGCCATTAGTACACAAACATGAGAA 1499645 29 100.0 43 ............................. ACTTGACGGCTCAGCAGTGGGCGGTCGCGGTTGCGTTGACGAG 1499717 29 100.0 36 ............................. GCAACCGCCCGGCGAGGAGCTTCACTTTTTTTCGAA 1499782 29 100.0 42 ............................. AAAGCGGGCCGGAGCGGGCCGTTTTTCACTCAGCGCCTTCTA 1499853 29 100.0 36 ............................. CCGTTTGGCCGACGCGATAGAGGAAAAATTAAGTAG 1499918 29 100.0 36 ............................. CCGTTTGGCCGACGCGATAGAGGAAAAATTAAGTAG 1499983 29 100.0 40 ............................. TCATCACGGCAAAGGACAACGCTACCAGCGCGATTAACCT 1500052 29 100.0 37 ............................. TGGAGACAACACCCTGTTCCATGGCCTGATGAATATT 1500118 29 100.0 37 ............................. CAATGTTCCTCGTCGGCGTGCAGAAGTTCATGGAAAA 1500184 29 100.0 40 ............................. ATTGGGTTGTCTTTGTTGAAGCGAACTACTCTGTAGTTTT 1500253 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================ ================== 25 29 100.0 39 GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Left flank : CGTGTTACTGAAAAAGAGATTCGGCAAGCCTCCACGTAAATCCCGGAATAGGACAATTGTCTTTCCTGTTTTTTGAATTTCGTAGTCATCTCACCGCCAGTATCCCAAAACAGGCAGAGGAAAGGTTATGGCATCGGGGTTACCCTGCCCGTAGTAATTTTCCACAAAATGCATACGTTTGATAGTCCCAACTTTGGAGGCTCCCATTTTAAAAATTGGTCTCTGCAATTGGAGTTTAGATAGCAAAGAGAAGGTGTTTAATCGAGGATTTGATTTCTGGCCGAGGATAGGTTTGAGACTTGCAAAATCCGGGTTTCGATTTTTAGAACGCACGTCTGGAGTGATTTTCTTGGCCAGCGAGGCAAAAAGCCCTATCTCAGACCCCACCAGCTTTCGGGCCGGCTTTATAAATGAACTGCAGTGTTACCGGTCTGGCGAAGAAACCCTTAAATAGACCGATGTTATTAATCCTCTGAACGAATGAACGGAAAAAGTCCAGG # Right flank : GTAGAGAGAGCTGGCAGAGCGACCCCAGCATAACTGACCCTGGTTTCCGTAGAACAGTGCACTACTCCCGACAGTTCGCCGTCACAGGGGTGCATTTTCCGTATGTGGTGCGGATGCTTCTTTTTGTTACATTAACTGTTCTGGTTTGTGGGGTTTACTGCCCGTTACCTTTGCAGATTACTGCATCGTAATGATTTCCCAATAGATAATAGTAGTGAAAATCGAAATACTTATATTAGTCAAAATCTAGTATCGGGCTGGTGTAACCCATAACGCGGTGGGAGCATGAGGCTGAAGCTAACCCTTGAAATCGAAAACGGCTTCTCACGGCCAAACAAGCACGCGGTGCAGGGGTTTATTTACAACATGCTAAAGGACACACCCTATAGCCAGCGCCACGATGAGCCGAGGTTCAAGTTCTTCACGTTCTCAGACTTCTTCACTGACAGAGAAGGGAGAATTAATCTGCTAGTCTCCTCACCGGACGCGGATTTCATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACAGTGTTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 1504756-1506616 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1504756 29 100.0 38 ............................. CAAAAGGGCCGGGGTTGAGTTGTGGTTATATCCCGAAG 1504823 29 100.0 38 ............................. CGAAGATACTCCAAAGGAGACAATTGCCCGTAAACTGT 1504890 29 100.0 37 ............................. GGGTTCATCTCGCTAATTTTGTCGGGTGGGTAGTAGG 1504956 29 100.0 39 ............................. ACATAGAAGCCGAGCCAGCGCCTGTCCTTGCGCTTCGTG 1505024 29 100.0 39 ............................. TGTTCATGTCAAGTTCGATCACATAATCGCCATTTTCAT 1505092 29 100.0 42 ............................. TGCGGAGGACTTGTACGCGTTGATTCCGCTTGATGATGCAAT 1505163 29 100.0 43 ............................. CTTTTTCCCCGTCTTCGCTTTGCTCTTTGACGTGAATAGCCAA 1505235 29 100.0 37 ............................. GCATTCCTGAGAACACTATCTATGAGCTCACCTTCAC 1505301 29 100.0 37 ............................. ATCCTCCTCGAGGGCGACGATGGAAAGCACTACGTCG 1505367 29 100.0 40 ............................. CGTTTCTAACCTTCGGCGCGTGGTTCTGCGCGCTTTGAAG 1505436 29 100.0 40 ............................. AGGAAGTGTACATCTATGAAGGTAGGCGCTGGTGGACTTA 1505505 29 100.0 39 ............................. CGGGATTTGCTTACGGCGCTGGAGAGGTTGAAAGCGTCC 1505573 29 100.0 38 ............................. TGTGGCCAATGATCTTTTGTGCCATTTCTGCTTCTTTT 1505640 29 100.0 39 ............................. TTTAACTCCCTCTGGAAGCTTCTTCCACAGTATCTCCCT 1505708 29 100.0 43 ............................. GGCTCTTCAGCAAAACCGAACCAATCAGGCGCTCCTTTTTCGC 1505780 29 100.0 40 ............................. GCCTTATGCCTTCCCGGTTTCGGGCTTCGGGCATGAACGT 1505849 29 100.0 36 ............................. ATGGTGATGTAGCCCTTTCCGTTGAAGCCAATGAAA 1505914 29 100.0 41 ............................. CGCTTGGGCGCTGGTTTGTCAGGGTCCTCATGGGTGCCTCT 1505984 29 100.0 40 ............................. TCAGTGGGAGTATTGCGACTGCTTCAGCGGCTTCAGTGCT 1506053 29 100.0 38 ............................. TACTTCTGAAGTCCATTCTTCTCACCCCAAGATTCCCT 1506120 29 100.0 37 ............................. GAAACGCTGAGATTGACTATCATGTGCAGACTACCTC 1506186 29 100.0 37 ............................. GCCAGGAGCTGGAATATTTTCATGTATGGGGCCAGCT 1506252 29 100.0 41 ............................. AGCGGGCTGGTCTCGTTGTAAAGCATGGCCCTGTTACCGCC 1506322 29 100.0 37 ............................. TCGCGGTATTTTGGTTCAAGATAGCGTGGCCTATCAT 1506388 29 100.0 37 ............................. GAGTCAGGCCAAAAGGTAGCTGTAGGCCCCCATTTAA 1506454 29 96.6 39 ...........................G. TCAGTCCCCGCAACGAACTCCTTAGAATAAACCGACTCG 1506522 29 96.6 37 .....C....................... AGGATTTGTATTTCCAATAGAATCTAAAGAGAATACG 1506588 28 72.4 0 .....C.......C..-.C....CC..TA | G [1506601] ========== ====== ====== ====== ============================= =========================================== ================== 28 29 98.8 39 GTTTCTGTAGAACAGAGTTGTGTGGAAAG # Left flank : CGTGCTACTCTTTGGTGGAGAACCAGTTTTCGTATTTTGATTAGGGCTTTTTGTTCTTTGTCTCCCCTGTTTTCTCAGTTTAGGGTTACTATGCCAGTTACGGGGAATTTAGAGTCTGAGAGCAGAATTTTGAATTCCAACGAGACGGTGATTTTAGGCTGACCTAATTTATCTCTCGGAACCCCTTCTGGAATGAAACGCCTTTAAATCCAGGACGGGGCTTTTGGTGGGGAGTTTGAACCCCTGAGCGGTGATGCAAACGGCTTAAACCCAAAAATTTTTGAAAATTGCGGGTTAAGCCGTCTTCACGGGGTTTCGATTCTTTTAATGGTATATTGACCCAAGAACCACCCAGCATACCGTAAAACGGCGGTTGAGATTGCTTTAAAAATTCCGGGTCGGCTTTATAAATGGAGTGCAGTGTTACGGGCCCGATGGAGAAACCCTTAAATAGACGAATGTCGTTAATCTTTTGAAAGAACGGACGGAAAAAGTCAAAA # Right flank : AAGCCTGCTCAAGCAACGGTTCAGGAGGTCTTTCCGTGAAGAAGCCCTACTACATAACCCGAATCGGGACCCTCGAAAGGAAGGGCAACACGCTATTCTTCGTGAACGAGGAAATCAAGAGGGCGATACCCATAAACTCCACCAGCGAAATCCACTGCTTCAGGCCCGTTTCCCTGACGAGCGGGGCGATTAAGATACTCTCCGAGAAGAACGTCCCCGTGCACTTTTACAACAAGCACGGCTATTACCGGGGCTCCTACATGCCGAGGGAGGGGCAGATAAGCGGGACTGTAGTTCTGGCTCAAGCAAAACACCATCTCGACCCCGAAAAAAGGCTCTACGTCGCGAAGCAGTTCGTTGAGGGCATTAAGGCCTCGATGGTTGCCCTCCTGAAGTCCCATGGGGCCGATTATAAGGCCATAAAGGAAATCCCTGTTGATGGAGAAAGCCCCGCGGAGCTCATGGGCGTTGAGAGCCAGCTGTGGAGGGAGTTCTACGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTGTAGAACAGAGTTGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 1627397-1627102 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1627396 30 100.0 37 .............................. ATAGATGCCAAAGACACGCCTGAAGCAATGCAGTTCA 1627329 30 100.0 35 .............................. TATTGTCTCGTTTTTCACGTTCACGGTGAGGGTGA 1627264 30 100.0 36 .............................. CGAACTACGTATAGGACCCTAAAGCCCACCGTGTCA 1627198 30 96.7 37 ...............T.............. CGATGATGGCCTGTAGATTATCAAACTCAGCAAGGCC 1627131 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 99.3 36 GTTGCAATAAGACTCGAGGAGAATTGAAAG # Left flank : TAATATGGAAGCTCAGGGAGCTTGGCTTTGATGTGTTATCACGCTGAGGCAAGGCCTTCTTTGAGTTCTATGTTTGATTGGCTCTGTTTCCTTATTTGGAGCTTGGAAACAACCAGGGGGTTGGATTTTGGGTCTCCAAAAAATGTAACCATCTATAATATTTTGCTGGATTTGATGTGACGAATTTTCTTCGAAAAGAAGGGCAGGACGTTTTGAGTCCGTGAATTTTGCCAATCCCAACTGAAATCGTGCCCTGTTCAATTTAGTGCTGTTATAATCGTTTGTTTTTGTCTATCGTCCCGGTAACGTTTAGGGGAATGCCATCAAATTTATTCGGCTCAGATTTTTTGGTGAGTCTCTTGCTTCTACCTGAAAATCGGTGTTCCCTCACCGCTTGAATTCAGGGCCTCTGATGGATTTTATAGTGGCTTTTTCAGAAATGCTTAAATATTGGGGCGTTCTTATTTCTCCTCTGGACGAAAGGGCGAGTTTCACGCCCT # Right flank : CTCTAGAGAGTTGTACCAAAAGCTTAATCCTCTCATGTTGTGTATTGAATCTCATGAAGAGGCTCGGCGTCGCGCTCCTACTCCTCGTCCTCCTCGCGTTCCTTTGGAGCATACACGCCAAGGTCGTTGAAAACCGGGCTCCTAATCACACCGTTGCCCCGGCCACTAATTGGTCCACGCAATCGCTCGGAGAAGAGCCTATAACGGCTCAGCAGTACGAGAAGCTCCTGGGCGTTGGAATCGACGTTGACTGGATGAGCTTCGCGAGGGTTCACCGCTACTACTTCTACTGGCGCTCGAAGGGTGTGAACGTGCCAGAATACTTCAAGAAAGCTGGCTTCTCCAACGTCAGGATAAGGGTAGAAGCTGACGTCGTGAACAACAAAACCGCGTTGGTCCAGCTCGGCGAGATAGTCAACGACACACTCAAAGCCGGCCTTATCCCAATTATCACATATACGGCACCGGAGCTGAGGAACGACCCGACGAGCGAGAAGGCC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCGAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 6 1801406-1800239 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 1801405 28 100.0 55 ............................ AAGGAATATGTATGCTGGCATAGACAGCACGGATGTGGTTATAGTGTTCTCTTCG 1801322 28 100.0 54 ............................ ACAAAAACCAGGGCAAAATTATGTGTATAATTGAGATGATTATACTTGCGGATG 1801240 28 100.0 46 ............................ AGGTTCGGAAACGCGTCCACGTGGGTCGAAGTGGATTTTGTAGCCC 1801166 28 100.0 47 ............................ TTGTAATCCACACTGAGGAAGTTCCCAGTCAATTCTCCTTCCTCAAA 1801091 28 100.0 36 ............................ ACCATCGCCGAGGTTGTCAGCGTGAAAACCATCTGC Deletion [1801028] 1801027 28 100.0 51 ............................ GTTGTTCACGAGGGAGAGTATCTTACTTATCGGGAAGTCTGTGGCGTCGAG 1800948 28 100.0 39 ............................ ATGCAACAATCCTCGGTAATTGTGTCTTGTTCACGCTAA 1800881 28 100.0 50 ............................ ATTCACGAAGCCTTTATGTCCGCCGTTTCAACGGACAATATGGATGAGAT 1800803 28 100.0 43 ............................ CAATGTCTTGTTCGTAAGGGCGTACCCGGTCTTCAGGAGTTCG 1800732 28 100.0 57 ............................ TCACCGGGTGCCGTGCTCTTCATGAAGACATTGTCAATTATTCCGAACGCTGCACCA 1800647 28 100.0 49 ............................ TTGGAAGTAAAAGAGAAAAATCACTCAAGATATATTGGTTTTACAAACC 1800570 28 100.0 45 ............................ ACCCGAAATAGAACTGTACCAAGAAAAGTGGGGTAGGGAGTCACT 1800497 28 100.0 47 ............................ GGAGAAAATCGAAGACCCCTCTATCCGCGCTTTCAATGCGGAGCCAA 1800422 28 100.0 52 ............................ TTGAGGACGTACTTCAGTATTTCCCTGTTCTCTGGGCGAGCAAGCACCTCGT 1800342 28 100.0 48 ............................ CGTCGGGCCATCTCCGTATCCCCTACCGGGTGTTTTATCAACTTATTA 1800266 28 92.9 0 .....................C..G... | ========== ====== ====== ====== ============================ ========================================================= ================== 16 28 99.6 48 GTTTCCGAACCTCTAGAAGAGTGGAAAC # Left flank : GCGAAGGTAGAGGAGCACGAGGTCGATGGGAGGAAGGTCAAGGTCGTCGTCCACAGGAAGGGAGCGACGAGGGCCTTCCCGGCCGGCCACCCGGAGATTCCAAAAGCTTACCGCGATGTAGGACAGCCGGTCCTCATTCCGGGCTCGATGGGAACCGCGAGCTACGTTTTAGCCGGAGCCGAGGGCTCGATGAGAGAAACCTTCGGAAGCTCCTGCCACGGCGCCGGAAGGTTGCTCAGCAGGAAGGCCGCAACGAGGCAGTACCGCGGTGACAGGCTCAGGAACGAGCTCATGAGAAGGGGAATCTACGTCCGCGCGGCTTCTCTCAGAGTCGTCGCGGAGGAGGCGCCTGGCGCGTATAAGAGCGTTGATAACGTTGTCAACGTCGTCCACCAGGCGGGAATAGCGAAGCTCGTCGCGAGGATGCGCCCGATGGGCGTCGCGAAGGGCTGATTTCCCCCATTTTTGTTGTATTAAAAAATCGCCTAGCAGCGTTTAAT # Right flank : TGGTGGAACTGAGGCCCTTTCGGGTCTGGCTGGTAAACGGCTTGACTATTCTTATAAGCTTCCAAACCAATTCTCCGAGGGTGGTCCCATGGAGCTGACGCACGTTGATGAGAAGGGCGTGAAGATGGTCGAGGTCGGGCATAAGGACGTCGTTTTCCGAAAGGCCGTTGCGAAGGGGAGGATTAAACTCAAACCGGAAACGATAGAGCTCATTAAGGCAGGCAAGACAAAGAAGGGCAACGTGATAGCGGCGGCCCAGATTGCGGGGATTCTCGCTGTCAAGAAGACGCCCGAGTTGATTCCCCTCTGCCACCCGATACCGCTGACCGGTGTTGACATCTCCTTCGAGTTCGGCGAGGACTACATAGAGGCCACCTGTGAGGTCAGGGCGTACTACAAGACCGGCGTCGAGATGGAGGCCTTAACCGGCGTAACGGTCGCGCTGCTCACGATATGGGACATGGTGAAGGCCGTCGAGAAGGACGAGAACGGCCAGTACC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAACCTCTAGAAGAGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 7 1819199-1820179 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================== ================== 1819199 28 100.0 42 ............................ CCCGAAAGCCTTTCCCCGATAGTGGCACCCGTGATCTCATTC 1819269 28 100.0 45 ............................ GTCTTTGTCCCTCGGGTGGGGCGGAAATTCATCTATAAGCCACTG 1819342 28 100.0 51 ............................ CCCGTCTCTATTTCTGCAACATCGGTTTTGATGCGGATTATATCTCCATCG 1819421 28 100.0 44 ............................ ACACCCAATAAATTTCTCCATCTGTTGAATTTACATATTGTCCA 1819493 28 100.0 48 ............................ CTTGTACTTGCTTTCGGACTTCCTGACAAGCTCATCGAGTGGGATTAT 1819569 28 100.0 46 ............................ CTCGGGGCGCTCGAAGGCGGCCCCTTTTCTTACGGCCGCCACCACA 1819643 28 100.0 49 ............................ GCTCTTTGAATCATTGAAAATCACCTCTCGTACAGGGGTTGCGGCTGAA 1819720 28 100.0 46 ............................ ATGGGAGGAACAATCCCAGCGGGTCGGGCGGCAGTTCGCAAATCAA 1819794 28 100.0 53 ............................ CTGGTCCGCAGCCTTTTGAGCGGCAGACCAGATTGAGGCCGCGCCCTTCGCCT 1819875 28 96.4 67 .....T...................... GCGGAGAAGAAAAGCACGTAGGGCAAAAATGCGGAAGAAAAGAAAGCGGTAGTGGTTTGAAAAAAGA 1819970 28 100.0 69 ............................ CTGGCACTGCCCAGAAGTTACCCTCCTCGTCCATAACATATACTGGGAGTCCCATTACTGAATCTTTGA 1820067 28 100.0 57 ............................ TGGCTGTTCCCGTGGAGCGTTCTGGGGGAGTTCTGTGTTATTCTCACTGTTGCTGAG 1820152 28 78.6 0 ..................A.C...CTTG | ========== ====== ====== ====== ============================ ===================================================================== ================== 13 28 98.1 52 GTTTCCGAACCTCTAGAAGAGTGGAAAC # Left flank : TGGGGGTGGATTCGCCTTGAAGGGTTTTTTAGAGCTCTTAAATCGGATATCTGGTTTCCATAATTTCCCATGGTAATTTGATGTACGTGTTTGAAATCCAGGGCGTTTGGTGCCGGTTTTAACGAGCTACAGGTACATTGAAGCTTTTTCGGGTCAGAGGAGGTAGATGCGCTGGTTTTTGGGTTGGGTGTTAATGGAGGTTTTTGAGGGGCTTTTCTGGGGTTTGGGGGCTTTTCCGCGGAGTGCGGTGGATTGAAAATGATGGACAAGCGAGTGTGGGCTGAAATGAATTGTTATATGGCTTTTAGGGGTTTTTCCGGGCTTTTTGATGGTTTTTTGCGGGTTACGGCCTCTCGGGATTGTCCGTTGGCATGTTTAGAACTAACGGTGGTAACAAATTGGCCTTGGCGGGGGTGTTTTTAGGGGGTTTTCCGGGCGAAAAATTTATATAAGGCTTCCTGGTTAAGGTTTATTGTTGGAATGAAGGGAATTTCCGGACC # Right flank : GATTTGGATTGTGAAATGAGGAACTCCTGCATAACGTTAATAAGGTCGAGTTGTGGAAAAGCTCACCATGTCAAATGAAGGGCTGTCCCAGGACCAGAGGAAGTGGGTTGTCTTCTTCCTCCTGAACCTTGGGTTGGTTCCCCTTATAGTTGTAAGAGCCGAGAGCGTTTACTCGGGCGACTACATGCCCTTCCTTGGAGTCACCACGCTCCTGTTCCTTCTCTCCGTGGCCCTCGCGTTGGGGGCGGGCTGGGGCCTGTGCGGGAAATCCATGGGACGGAATAATGAAAAGGGGGATGAGCCCAAACTCCTCGACTTCCTTCGCTTCTTCCTCCTCCGGTACTTCGTAGGTGAGGCCCTCCGCTCAATCTACGGCCTCTACATCTTCGTTCTCTTCGCCGTTACACTAACGGCTTGGCTCCCGGATGGTTTCGAGAACGGCAACGTGCCGTTTATCCTCGCATCTGTGCTGTACTTCCTCTCGTCGGTTTTCTTCACGG # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.52, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAACCTCTAGAAGAGTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 8 1823855-1824342 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================== ================== 1823855 28 100.0 46 ............................ TTGACATATTTCTGGAGAAGTTCAGGAAGAAAAATCCAAGTGTCAG 1823929 28 100.0 52 ............................ CCTGTCATCACCATCAAGGGAGGAAGGTACATCATCGGCAACGAGGAGCTCT 1824009 28 100.0 46 ............................ TCCAAATTCATCACTACCACCATAATAGTTATTCTTTTGTGCACTT 1824083 28 100.0 54 ............................ CTGGAACGTATTGAACTATCTTGTCAATCCACTTATTCACGCCCTTTCACCAGT 1824165 28 100.0 44 ............................ GGCCATAAAGAACGGGGGTCTCATTCTGGAGACCCCACAGGGTA 1824237 28 100.0 50 ............................ TCATACCTCTCTCCATAAACCGCCCCTCAACACAAAACGAAAACCTCTTA 1824315 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================================== ================== 7 28 100.0 49 GTTTCCACTCTTCTAGAGGTTCGGAAAC # Left flank : GCCTCCAGAGGACGAGGTGAACGCGCTGATAAGCTACGCCAACGCCGTGACATATGGATTGGCATTTTCTTCGGCCATAAAAGCCGGTCTTGACCCCGCGATAGGCTACCTCCACGCGGTTAACGACAGGAGACACTCGCTTCCACTGGACTTAGCCGACATCTTCAAGCCGCTCTACGTCTTTACGACGATTCACAGGCTCTACACCGGAGGAAAGCTCAGAAAGGGACACTTCTCGAGGAAGGGAAAAGCCGTTTACCTGAGCAGGGAGGGGAAAAGGTTGCTCCTCGGCGAGCTGACTGCCACGCTCATGACGACGGTTTACTATGGGAGGTGGAAGAGGAATGTGAGCTACCGCTCCATGCTCGACATGGAGGCGAGAAGGCTCAAGAAGCACGTCCTCGGCGAGGAAACCTACAGGCCCTTCAGGCCGTGGTGGTAGGCCCCGGAAATTGATGAGCACGCCTCTGGCCCGGCTTCAGACCGGTTACATTTTTTCA # Right flank : CGGTCCGGAAATTCCCTTCATTCCAACAACAAACCTTAATCAGGAAGTCTTATATAAATTTTTCGCCTGGAAAAGCTCCTAAAAAACAAAAACCACACCACTCCCCTCAAACCACTAACAATAGTAAAAAGGCAAAGTAACCAACCAAAAAACCCGAAAAAGCCAACAGAAGAATCACAAGCAATAACCAGCCCAACCAAAAGACTACAAAACTCGAAACTAAAAACAAAGCCTCTTACAGAATTTTTAACCCACCGCAAAGGCCAGAAAACCCACCATCAGCTAAAAGAAACCCGTCAGAACCCCCCGAAAACACCCAACTCAAAAACCAGCACATACTAACTTTTAAGCCTCAAATCGACCGTTACGCCCTTCTTCAAGCATTCAAACGAATATCCTAACTCTTTTGCAAAACATGTACATGCTAACACTCTTATGTAACGTAAAAACCAAATACCCCGTTTAAGGGCTTTAAACTGCTCTTCAAGACGAATCCACCC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACTCTTCTAGAGGTTCGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 9 2106466-2105698 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT900021.1 Thermococcus henrietii strain EXT12c chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2106465 30 100.0 38 .............................. GGTTGATATTGGCCTTAGCTCCACACGGCTCACCCAAA 2106397 30 100.0 37 .............................. CGACTCTCTCGTAAATTTTGAGGTCTTTCCTCGGGAG 2106330 30 100.0 37 .............................. CCCTTACGGAGAATAAGTTTGACTCTTTTCTCTTTGA 2106263 30 100.0 37 .............................. TGAGAGGCTCTTTAACGTCGGCGATTTCTCTAACGCT 2106196 30 100.0 37 .............................. CTGTAACGGTAACGTTCGCCTTCTGGTTGGCGTTCAC 2106129 30 100.0 37 .............................. AGCCAAGTTCCAGCCCCACACGACCCAACTTTTCCAC 2106062 30 100.0 38 .............................. TTTTCTGTTCGTGTTTGGTCTCGGGTTTGAGCGTGGCT 2105994 30 100.0 37 .............................. CTTTAATCTTTTCAGAGACATAAGCCGTTCTCTTTGA 2105927 30 100.0 36 .............................. ATGAGCTTCGATGCATAGATGACGAGCAGAACGAAA 2105861 30 100.0 37 .............................. CAGTGTCATACTGAGCCCCAAACTGCGAAACATCAAA 2105794 30 100.0 36 .............................. TCGTATTCGGTTATGCGGTTGTCTTTTGCTAAGTTG 2105728 30 90.0 0 ...............A.A...........A | A [2105702] ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.2 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : CCCCAAGGACCAAGGACGGCGTGCCGATTGAGTGATATCCGGATGAGTGCTGTTTTCCACAATTTTCCGGCCCACTTTAGCCTTCCTCTGGAGAATGCTCTTACAGGCCCACCCCGGAAATCGATTTTTATGGTTATGTAGACGTAACTTATTGGAATGATTTTGTTGGTCTGTGTAACGAGATATTTTCGGACAGTTTTAATGATGCCTTTCCAACGCCTAAACGACCGTAAAACCTGTTTAAATCAAATTGTTTTTGGGAGAAACGCAGGATAGCCGTTGGACGACCCAACAGAGGTCAGTAACACCTCGGGAAATCGCGGTAAGCTATTCCCTCGACTGGGGGAAGCGCTAATCAGGTTGCTTGCACTTGTGGGAGTGCCCATCAAGCGGTTTGGACAAGCCACAAAAGGCCAGGGTTAAAGCCCGATTTCCAGAAAGGCTTAAATATCGAGAGGTCCTTCTTCCTTTGTTGGGCGAAAGGACGAGTTTCGCCCCCT # Right flank : GAAAACCCCTCACTCTCTCCCCTTCCGCCTTCCCCATCCGAGCCTTGCGGTCAGGATTTTCTCGCTGGCGAAGACCCTTGCGGTTACGTAGAGCGTTGCACCGGCGACGATGGCGAGGTAAGCTATGCTCGCACCGAGGGCCGTGTAGTCCTTCGCTATCACGTAGCGGTAGTCCACGACAGGGTGAGTGAAGGGGCTGGCGAGGAGCAGGTACTTCCAGAGGGCCGGGAGCTGGCTAATATCAACGAACATCAGGACGAACGAGGGGAAGGCAAGGGGCAGTATGACCGAGCTGACCACCGTGTTGGCGCTCTGAACGTCCTCGGCGAAGACAGCCAATAGCATCGCGAGGCTCAGCGAAAAGGCTATCGTCAGGAAGACGACGACGCCGAAGAGTGCCATGCCGGCTGGTGTTATCGAGAGGCCGAGTTCACTCAGCGAGACGCCCGTCTGGGTCCCGAACCCCGCCATGTACTGCTTGAGGCCAATCATATAGGCTA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //