Array 1 5694-3625 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWBQ01000005.1 Macromonas bipunctata strain DSM 12705 DSM12705_1_(paired)_trimmed_(paired)_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5693 28 100.0 32 ............................ ACACTCCGCGCGTCCCGGATCTGCCGCATACA 5633 28 100.0 32 ............................ TTGGTTACGGGCCTGCCCGGTCACGGAAAAAC 5573 28 100.0 32 ............................ GAAAGTCGGGCGGCCAGACCATCAAACGCGCC 5513 28 100.0 32 ............................ ATGGCGCAAGCGCAAGACATCCGCACCAGCAC 5453 28 100.0 32 ............................ CTGGTAGAGCGCACCGCCGCCGAGCTGGGCGT 5393 28 100.0 32 ............................ TTCGCGCCCACGTAGACAGCAAACACGGCACC 5333 28 100.0 32 ............................ GCGCACAAATTTAGACACCACCGCGCAAGCCA 5273 28 100.0 32 ............................ AAGTAATCGAACGACAACAAGGACACACATGC 5213 28 100.0 32 ............................ GATTTTGATTCGGTATTGACTTTAGATCCATC 5153 28 100.0 32 ............................ TTCCACGGGTAAAGCTCTTACCCCTGCCCAGC 5093 28 100.0 32 ............................ TGTTCGGGGCCGCGGTCAACCTCCTGAATTTA 5033 28 100.0 32 ............................ TTGCAATGCGCTGCTCTGCATTTCACTTCCTT 4973 28 100.0 32 ............................ ATGCGGCGGGGGCCGTATCGGGCTGTACCGGC 4913 28 100.0 32 ............................ TGGAGGGCAACATCGTGAAGTACATCACCCGC 4853 28 100.0 32 ............................ TGGTACACCTCGGTGTGGACATCTTCCAGCGA 4793 28 100.0 32 ............................ GCATTCGGATTGAAGCCGCTGCTTTGGAGCGC 4733 28 100.0 32 ............................ TTCAACGGGATGACGGGCGGCGCCGTCCGTAA 4673 28 100.0 32 ............................ CAAACCGTGGGCCAGATCAACGCCCAGCGCGC 4613 28 100.0 32 ............................ ATCAGCATGTGGTCAAAAGACAAAGCCACCGC 4553 28 100.0 32 ............................ AACGCCACCAGCGCCCACGGCGTCCAGCATGG 4493 28 100.0 33 ............................ AAGGACGTGGCCACGCTGGCCACCGAAGCCGAC 4432 28 100.0 32 ............................ TGTGCGCGCTGCGCCCGATTGGCGCATGGTCG 4372 28 100.0 32 ............................ TTCGCCAGCGTGCAAGCCAGCCGCGCCACCGC 4312 28 100.0 32 ............................ TGAATATTCCCAATTGGCAAGAATGGGATGTG 4252 28 100.0 32 ............................ CAGTGCGTCCAGTAGTCGGCGCGGTTGTAGAT 4192 28 100.0 32 ............................ ACCGGGGCCAAGTGCCCGCGCTGGAAAGCACC 4132 28 100.0 32 ............................ AGGCCGGAAAAAATAACATAGCCAAAACCCAA 4072 28 100.0 32 ............................ GCAACGACTACTGGACACACTGGGCACCGCTG 4012 28 100.0 32 ............................ ACGATGTAAGCGCCGGTCGGCTGCTTACCATC 3952 28 100.0 32 ............................ ATCATGCTGTTCTGGCCGGGGGATTCTTTTGT 3892 28 100.0 32 ............................ GCCGTGGGCCGGTCGAATATCGGCATAGTCGC 3832 28 100.0 32 ............................ GTGGGCCAGTCAAAACCCGGCCAAGCCCGCGC 3772 28 100.0 32 ............................ ACCCCGTCAGGCGCTCAAATTTCGCCGCATCC 3712 28 100.0 32 ............................ GCACTGCCCATGCCTTGCAGACGCAGCCCCAC 3652 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : GCGTGGTGTGCGTGACCATCTGGCCGACCCAGCGCCGCCTGTGCGCCCAGTGCCCGACGTGGTGATAGGCTACCGCACCGTCAGGCGCGTGCAGGTGGACAGCAACCCTGAGCGTCTGCGCCGCCGTTGGTTGCGCCGTCATCCCGGCATGGACGATGCCGCCGCGTTGCAGCACATCCCTGACACGCTGGGTCAGCGGTTGCCGCTGCCATTTGTGCAACTCAACAGCCTCAGCACAGGGCAAGCGTTCCGGCTGTTTGTGGCACACGGGCCACTGCAACCGCAGGCGGATGCTGTTGAAAATGTACGGCCACACTTCAACGCTTATGGCCTAGGTGTGCAGGGTGCTACCATTCCGTGGTTCTAATCCCCTTTTTTCACACAGCCATTGCTACCTCTTTTAAAGTCAATGACTTGCAGTGGCTGTTGAAAAAAAGGTACAAGCCTGTGTTTGTAGACAAGTTCTTTAAAAATCAAGTATTTGCTGTATATTCTGTCTT # Right flank : ATCAACGCAAAATCCACAGCAGCCCGCTCAACGTAAAAAACGAGACAAGCGTTGTCGCCAGTAGCGCCGCCGAGCTGATGCCCTCATGGCCGTGACGCTGCGCCAGAATCGTGTAAATGCCAAAAATAGGCATCGCGCAACTCAGCAGCAGTGCGGTGTGCAGCACCGGATTGGTCATCGGGATGGCGAAATACAGCACGCCCAGCACTACGATCGGGTGCAGCACCAGTTTGCCCACGCTAATTTGCACGACCACGCTGGCCATGCCTTGCAGCCGCAGGCCGACCAGACTACCGCCGATAACCAGCAGCGACAGCGCGCCGCTGGCCTGCGCGAACAGGTTGACCGTGCGCGACAGCGGCTCTGGCAGCCGAATTTCGAGCAACGAGGCCGTAAACCCGGCCACGATGGCGATGATCATCGGGTTGCGCGTCAAGCCCTTCAATGTCTGCTTCAAGGCCTGGCACCAGTTGCCTTTGCCGTCGGTGTCAAGGTCGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6620-4334 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWBQ01000032.1 Macromonas bipunctata strain DSM 12705 DSM12705_1_(paired)_trimmed_(paired)_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6619 28 100.0 34 ............................ TCCCTTCTACGCCGCTTCTGTTTGGGCGTGCCAC 6557 28 100.0 33 ............................ CCACCACATTTCAGCCCTTTTGTTCTCGAACCG 6496 28 100.0 33 ............................ TGACGCAAGCAAGTACGCTTACAAGGAACTTAT 6435 28 100.0 33 ............................ CCGCGAGTTGGCAGCCGACCTGCACGCCATGCG 6374 28 100.0 33 ............................ TGGCACTTCGTGGACGACGACGGCAACCGCGAC 6313 28 100.0 33 ............................ CGCCCGCCTGATCGCCGCTGCGCCTGATTTGCT 6252 28 100.0 33 ............................ TGCAGCAAGCCGACGACACCAGCAAGAGCGAAG 6191 28 100.0 33 ............................ TTTTGCCGTGCGGGCGGGTTAAGGGAACAGAAA 6130 28 100.0 33 ............................ CCTGGACTGCTGGTGGTGAAGAGCTGCGAGCGC 6069 28 100.0 33 ............................ CCATCTACAAACGATCCGGCGACACGTTTACAA 6008 28 100.0 33 ............................ CGAGCGCACCCGTCAGGGCCGTGAAGTTGCTAA 5947 28 100.0 33 ............................ TCTTGCTCGGCCATGTAGTCCTTGCTGGAGGTC 5886 28 100.0 33 ............................ CGTCAGAATCTTCACATCTGATGGTGTTGGTAT 5825 28 100.0 33 ............................ CACCGCCAAGAATGCCGCACAGGCCGCCGCCAC 5764 28 100.0 33 ............................ CGGCGCGAAAGTCGCCACGTCGTTCATTACATC 5703 28 100.0 33 ............................ CAGGCCAGCGGCAGGGCCGGTGGGTGCAGCGGG 5642 28 100.0 33 ............................ TCCATGCGGCTGCTTGCGCCGGGGTGATGCAAG 5581 28 100.0 33 ............................ CCAAAACGCGCCGCTATGGCACGCCGTCGCACG 5520 28 100.0 33 ............................ CTGGATGCGATTGAAGATTTGGGTACGCTCATT 5459 28 100.0 33 ............................ TTGTTTCTGGACGACCTGCGCACGGTGAAAGCC 5398 28 100.0 33 ............................ CATCAGGCGCTGGATGTTATCGCCCAGCATTGA 5337 28 100.0 33 ............................ CACATCCACCGGCGGCAAACCCACGTCAGCCGA 5276 28 100.0 33 ............................ CACGTCCTTGGCGGCTTGACCAGCATTCAGCAA 5215 28 100.0 33 ............................ TAGGGGAAGGGTTAGTATAAAGTTGCCAAGGCT 5154 28 100.0 33 ............................ TCACCGTTGTCGGTCATCAGACAGATCATGTCC 5093 28 100.0 33 ............................ TTCAGCGATTTTGATTATGCGCGCGCGGTGTTG 5032 28 100.0 33 ............................ CGCCTCTTGCTCCATCAAAGCGTATTGCTCAAA 4971 28 100.0 33 ............................ TGCCCGTATTCACCCGCACGCGGGCGCGCTGCT 4910 28 100.0 33 ............................ CAAACTGCAACCCGGCCAGCCCGTGCCCGTTGG 4849 28 100.0 33 ............................ CCGCCCCCGTTTCTTGCGCGTACAGGGCCAAAG 4788 28 100.0 33 ............................ TGCTTGATTGTGCGGGTCTGCACCCCACACAGC 4727 28 100.0 33 ............................ TGCTTCCTGATCGTCGTTGAAGATGTCGTGTGC 4666 28 100.0 33 ............................ CGAGATGGACGAAGATGGCATCGAGCAAGATGT 4605 28 100.0 33 ............................ TAAACCTCCAGCGCATACCGCGCAACGGGGCCG 4544 28 100.0 33 ............................ TCAGCTCACAGTAGGACTTATGTTGTTGTTGAG 4483 28 100.0 33 ............................ TGCGCCCGGATTTGATGCACGGCGCGGGGAGTG 4422 28 100.0 33 ............................ CTACGACCTGCTGCCCGACTTGCTGGCGCTGCA 4361 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 38 28 100.0 33 GCCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TAGGGCGGGGAGGATGTCAACTGCCGCCCGCCGTGCGCGGACGCATGAAGCTGTGGTTCGTGGAACCCCGGCCCAATGTGTTTGTGTCCGGTGTCAAGCACTCGGTGGCCGAAACCGTGATCGACTACCTGTACAAGCACTGCCCGCCCGAATCGGGCTTGCTGATGGTGCGCTCCATTCCACAGCCCCCCGGTTTTGAAATGCGCTGCATCGGTCCACCGCGCAAGCCGACGATAGAAATCTCCGGCTTGCAGCTGATCGTCGAAACCCTGAAATCGACAAATACACCATAGGTAGTGTGATTGCTTTCTTTTGACGCTATACACTGG # Right flank : CCCAGCGCGCAATGCGGCCAGCATTTCTTGACATCCTCCCCGCCATTAATGGCAGGGATTCCCTCTACAGGACGGCCATGCCCGACCGCATCGGCTTGCGCCGACTCATTCAGCAAAGCGCCTACCTCTCGGACTCCCATGCGGGACGGCGAATCACCGGACATTTCTGTGCTCGGCTCCAACTGCCTAATGGCAAAAGAAGAATTTGGAACTGTCGTCGCAACAGAGGGCAGTCTACCACCAGACAGGCCGTCCCGGCCTGTTCGCTCAGACCTCGGGCTGAACCCCGAGGCTTGCCGCTCAATCTGGGTCAAGCCCGCCAATCGTCTCAATGAGGTACTGCGAAACATTGCCGAACACACCGCCACTTACTTGGCCGAATACAGGAGGTTGAACCCATGAAAAAGCCCATCACCATCAGGGCCGTGCGCGTTGTGGGCCCACTGGCCCTTGACATCGACTGGAGCACCGGCGAAACGCTGCGCCTCAACATGTCTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //