Array 1 420168-422209 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKD01000011.1 Salmonella sp. zj-f72 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 420168 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 420229 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 420290 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 420351 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 420413 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 420474 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 420535 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 420596 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 420657 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 420718 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 420779 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 420840 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 420901 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 420962 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 421023 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 421084 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 421145 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 421206 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 421267 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 421328 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 421389 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 421450 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 421511 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 421572 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 421633 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 421694 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 421755 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 421816 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 421877 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 421938 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 421999 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 422060 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 422121 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 422182 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 97.6 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439842-441823 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKD01000011.1 Salmonella sp. zj-f72 contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 439842 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 439903 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 439964 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 440025 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 440086 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 440147 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 440208 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 440269 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 440330 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 440391 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 440452 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 440513 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 440574 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 440635 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 440696 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 440757 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 440818 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 440879 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 440940 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 441001 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 441062 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 441123 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 441184 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 441245 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 441306 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 441367 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 441428 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 441489 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 441550 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 441611 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 441672 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 441733 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 441794 29 100.0 0 ............................. | A [441821] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //