Array 1 248758-251407 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBEQ010000003.1 Klebsiella pneumoniae strain KP-P1 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248758 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 248819 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 248880 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 248941 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249003 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249064 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249125 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249186 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249247 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249308 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249369 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 249430 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 249491 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 249552 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 249613 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 249674 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 249735 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 249796 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 249857 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 249918 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 249979 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 250040 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 250101 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 250162 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 250223 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250284 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250345 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250406 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250467 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250528 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 250589 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 250650 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 250711 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 250772 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 250833 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 250894 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 250955 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 251016 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 251077 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 251138 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 251199 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 251260 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251321 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251379 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1452-449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADBEQ010000065.1 Klebsiella pneumoniae strain KP-P1 contig00065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1451 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 1390 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 1329 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 1268 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 1207 29 100.0 32 ............................. TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 1146 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1085 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 1024 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 963 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 902 29 93.1 32 ............CA............... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 841 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 780 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 719 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 659 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 598 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 537 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 476 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 94.9 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATGGGTCTTCCCCGATCATGGTGGGAAGACTCAGAACGCCATATTCAGTTTTCCATAGTGGAACATCACTCCCAGCTTAAAGCGCTCCCGGTTCCTGTATCCTCTGGCTTTTATTCTCAGCA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //