Array 1 870-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTUU010000307.1 Escherichia coli strain 89H1 contig_00307, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 869 29 96.6 32 .A........................... GCGTGCCAACGGAATGCACCCTCATTGGTGAT 808 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 747 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 686 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 625 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 564 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 503 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 442 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [416] Deletion [402] 400 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 339 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 278 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 217 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 156 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 95 29 93.1 32 .A..........................A CCATCACATCATGTTTATTCGCGGTCGTATTG 34 29 96.6 0 .A........................... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAAGAACAAATGTATACTTTTAG # Right flank : GATCCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66485-65175 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTUU010000008.1 Escherichia coli strain 89H1 contig_00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66484 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 66423 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 66362 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 66301 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 66240 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 66179 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 66118 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 66057 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 65996 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 65935 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 65874 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 65813 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 65752 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 65691 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 65630 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 65569 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 65508 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 65447 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 65386 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 65325 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 65264 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 65203 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //