Array 1 1146124-1142724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024047.1 Natrarchaeobaculum sulfurireducens strain AArc1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1146123 37 100.0 38 ..................................... TAGCCAGACGCGAGTGTCTTCGGGGACCATCTGCTGGT 1146048 37 100.0 35 ..................................... GTTCGACTCCCGACAGAGTCCGAAGGGTCTCTTTT 1145976 37 100.0 34 ..................................... GTCGCGATCGTCTGGCCCGCGTCACCCTCGATCG 1145905 37 100.0 35 ..................................... TTGTCGGAGTCTTTCGGTCGCATAAGCGGCGCTTC 1145833 37 100.0 35 ..................................... TCTTTGGGACGTCGATCGTTGAGGCAATTTCTGAT 1145761 37 100.0 35 ..................................... AGCCAGACGCTATTGACGAGTTCTTAAACGATGTC 1145689 37 100.0 36 ..................................... TCGGCGACGACGTCGACGAGTGCCCCGAGTGCGGGA 1145616 37 100.0 35 ..................................... TCACGTCACGGTCGCTGTTCGACGATAGTGAGGAC 1145544 37 100.0 39 ..................................... ACTCGCTGTCCCTCGATCTCGGCCTCGAGGTCGTCGACG 1145468 37 100.0 36 ..................................... TGTCAACCAGCCTCTCAGAACAATCCGCGTTAGAGC 1145395 37 100.0 36 ..................................... CAAGTTCGAGTCCCAAGCCCGTTTCTCCTTGTTTGG 1145322 37 100.0 37 ..................................... ACAGCGATAGCCCCTCGAACCAGACCCTTTGCGAACC 1145248 37 100.0 36 ..................................... CGAAACGGCGATCTGCCGACACAGACCCACAAGGTT 1145175 37 100.0 36 ..................................... ACGTAGTAAATCGTCTCGCTCTCAGTCCAGAGGATC 1145102 37 100.0 37 ..................................... TCAACGAGGTAGCCCTCGCCTTCGTCGTAGTCGCCAG 1145028 37 100.0 37 ..................................... AGCACCGAATCGGCCTCGGTATCAAGCAGATAGACCG 1144954 37 100.0 39 ..................................... AGTCTGTCACGCCAAGAACGCTTGAACAAGACACGGACG 1144878 37 100.0 37 ..................................... GTCCATCGAGTGACCTTCCGAGGCTGCGTTCCAGACT 1144804 37 100.0 36 ..................................... TCGTGCTCGAACTCCCACTCGTTCAATTCTGTGAAG 1144731 37 100.0 37 ..................................... ATATCAGCACGGCGACGCCCGAAGACGACGCTACGAG 1144657 37 100.0 37 ..................................... TGAGCGTCCACATGGACGGCGATCGAGACGCCGAGAT 1144583 37 100.0 37 ..................................... GGTGGGTTTGAGGTTAGCGTATCCGGCGTGCCCGCCG 1144509 37 100.0 36 ..................................... TCATCCAAACTCGCAGAGTAGACGACCCCGTCGCTC 1144436 37 100.0 35 ..................................... AGTATTCCCATAACGTAGTTTGACGCCAGCGATAG 1144364 37 100.0 36 ..................................... GCTCTTGCAGCGCTGTTCGGATAGGCAACGGACTCG 1144291 37 100.0 36 ..................................... CGAAAGAGGATGTGGACGTCGCCTCGATCGTGTCCG 1144218 37 100.0 35 ..................................... CGCCGTACTTCGCCGCCTGGCCGGTCGTGCCGTCG 1144146 37 100.0 36 ..................................... AAGCTGATCTTTGGTCACTTCAAGTTCCGCGAAGTC 1144073 37 100.0 35 ..................................... GTGTCCCAGTAGACATCGCCCTGGACGTCGACCGT 1144001 37 100.0 38 ..................................... TCCATTGTGGTATCCGGCCCTGTAACCTAGTTCCCAAG 1143926 37 100.0 36 ..................................... AAGAGGATCTGCAGGACGCCGTCGAGGACCGGCTCG 1143853 37 100.0 36 ..................................... AGTGTCGGACCATACCGAAGACACGCTGAGAGTCAC 1143780 37 100.0 36 ..................................... TTTCTGACGGAGCCTGGCTTGCATTTTCGTAGACCT 1143707 37 100.0 35 ..................................... TTTCCAGAGCAACGATGGCCCAGATCACTCGTCAT 1143635 37 100.0 36 ..................................... GAAAAGGCACGGTTCACACCCCCCCAGAGCGGCCAG 1143562 37 100.0 33 ..................................... TATCCTGCAGCCGAAGCGCGCTCAGGTCCGGCG 1143492 37 100.0 37 ..................................... ATTGCGACTTTCGATTGTATTCATTGGGTATCACGCT 1143418 37 100.0 37 ..................................... CCTCGGCCGTCGCGAGACGCCAGTTCGCCGGCAGCGT 1143344 37 100.0 36 ..................................... GATGTATGCCTGCTCGACTTCCTGTTCCGCTTCGAT 1143271 37 100.0 37 ..................................... GTAGCGCCCGCGTGCGCCGTCGTACGCCGAGGGATAG 1143197 37 100.0 37 ..................................... ACGGTCCTCGCACCACTCACCCACACGCTCGCGAACG 1143123 37 100.0 33 ..................................... TTGTCTCTCGAGAATCACGGAGGTCTGTCGACC 1143053 37 100.0 38 ..................................... GCAGCGTTCAGAATCGCTTTGATGTGATTCGAGTCCAT 1142978 37 100.0 36 ..................................... CCGCAGGTCGAGCGCCGGCTATCGGTCGAGACGTGA 1142905 37 100.0 38 ..................................... ATAGTTAATGGATATTGCGTGGACAATTGGCGACGTGA 1142830 37 100.0 33 ..................................... TTCGGAGTGCGGTCTTAGTTGTCACTACCGAGA 1142760 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ======================================= ================== 47 37 99.9 36 GTCGCGACGGAGAGAAAACCCAGCACGGGATTGAAAC # Left flank : CGAGTATACTGTCACGCGCCGAAAGGCGGTCAGACAGCAGGCAATCCTACTCCGAAAGGCAATCACCGATGAACTCGAGATGTACCATTCTCTCACTTTCACGAAATAAGATGCGACTCGCCATTGCCTACGACATCAGCGGCGATGCAAACCGACGACGCGTATACCGCACCCTCGAGCGATACGGCGCATGGAAACAGTACAGCGTGTTCGAAATTGAGGTCTCAAAAACTGACCGTGTCGAACTTGAGGATGAACTCGAGTCCCATATCGATCCGTCTGATGGTGACCGAATCCGGATATATCGCCTCTGTAACGCCTGCCAGGACGCAACGACGGACCTTGGTGCGAATCAACCAGGCAAATCTTCGAACGTGATTTGACTGGGAGCCTTCGTGGACCTTTATTAAGTCCGTGGACAGCCCCTATCCACGAACAACTGGTACTAGATCACGAGTTGAGGAACGCTTATTTACCTTTTACACCGATGTTAACCCCCT # Right flank : ATCGAGGCGCGACTACCTCACCGCGGGGTGGCGTCGCGACGGAGAAAAATCTAGCAAACAAATAATAGCAAACTTATATTTTAACGTTGGTACTGGCGTCTAGTGCCCCTTCAGCTGTGAAATGGGCCGTGGTGAATCGCCATACGGCACTTGATTTGGCTAGTTGACGGCACGCTTGATGTTGTAGACGACACACATCAGAACGATTTCACGGAACTCACGATACCAGCTTCGCGCACGCACGGCATCGCCGAGCGTGCGCTTGATCACCGAGAAAACGGTCTTAGACAACGCTCTCTGGCCGTAAAGAGTCTCATCGATCCGCGCGTTATGCGCGTGATCGATGGGGCGGAACTCTCGATGCTTGATCAGCGGTCTGACGCCCTCTTCTCGGAGTTTCTCACGTAATCGTTGCCAGTCGTAACCTTTGTCGGCGGCAAGGCTGTGCAACTCGCCCGCGTTGCGGCGGGCGAGTTGCCAGCCGATCTGCGTGTCGTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACGGAGAGAAAACCCAGCACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : NA // Array 2 1155827-1158345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024047.1 Natrarchaeobaculum sulfurireducens strain AArc1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1155827 37 100.0 37 ..................................... GTTGCGGAGTCTTCGGGCGGGACGAGGCCAAGTCCCA 1155901 37 100.0 38 ..................................... CGTCGGTTGTGGATCGGTGTCGGTCATGCCTTCGGGAT 1155976 37 100.0 36 ..................................... TCGCTGCTGAGCTTTCGTGATGATCCTCGTTGCGAT 1156049 37 100.0 36 ..................................... ACTGTCGTCTCGTACGTCTCGATCTCTTCGAACGGC 1156122 37 100.0 37 ..................................... CGGTCGACACTCACGTCGTCGTCGATCCACGCCGGCT 1156196 37 100.0 36 ..................................... TTGGATCTCTGCCCCGCTTGGATCGTCTAATCTGGC 1156269 37 100.0 37 ..................................... CCGGACGCTTGCGGATCACGACCTACTGGACAAGGCC 1156343 37 100.0 37 ..................................... CGTTTGGCGTCACGATCGACGAAGTTGCTCTTGTGGC 1156417 37 100.0 37 ..................................... TCGGCTCTGGTAGCCACATGCATGATAATCAGTACGA 1156491 37 100.0 35 ..................................... GGGCCGCTGTTAGAGGACGGCCCGACGCCCGGCAG 1156563 37 100.0 35 ..................................... ACGTTCGACGGCACACGCATCGACGTGGCAGTCAC 1156635 37 100.0 37 ..................................... CGCCCCAGTCGTCCGGGTCGTAGTCGTCGATTTCGTT 1156709 37 100.0 33 ..................................... CGAGTGCCCTTGTGCTCCGAACTCCGAAGCGTG 1156779 37 100.0 36 ..................................... CGAGTCGATAGATTCGCCTTCCGAGACGGCCATATT 1156852 37 100.0 38 ..................................... GCCGTGCACACGGACGACCTCGTGGACGCGGTCGACGG 1156927 37 100.0 35 ..................................... TTCGGAGCGTTCGCGTTCCCGATCACATTCGCCGT 1156999 37 100.0 37 ..................................... AGCGTACGGTTCTCGTAGCTCACCTCGAGTTCGAGCG 1157073 37 100.0 35 ..................................... TGTATTCACTTTCTGGTTTGTCCGGCGGTGGGTTT 1157145 37 100.0 37 ..................................... CGCGTGCGCTCCTGCCGTTGCTCGAGAACACCGAGGA 1157219 37 100.0 39 ..................................... GGACGTCTGGTCGGTGATGGAGCCGATCTTCAACCACTC 1157295 37 100.0 35 ..................................... ATTCCGATGGGATTCATTCAGTACCGAGCGGGGCC 1157367 37 100.0 36 ..................................... CGCGCCGATCACTCCCGAGCACTAAGTGAGCCGCTT 1157440 37 100.0 35 ..................................... CCGCCGGCCGCGACCGTTCCCGTCCTCGTCTCCAT 1157512 37 100.0 35 ..................................... TGTGCCCCTCCGAGCGTTCAGACTGTCCCGGTCAA 1157584 37 100.0 36 ..................................... TTAATGACGGCGGATGGGTAGATGTTTCATCGGACA 1157657 37 100.0 37 ..................................... TCCGGCCGCTCGCGCTCGTCGTCGGTCTCGTCGCCGT 1157731 37 100.0 31 ..................................... ATGACCGACGAGATCGTCATCGGGCGGTCGC 1157799 37 100.0 37 ..................................... AGCGCGTAATGCAGTCCCTACTCGAGCGGGCGATGGC 1157873 37 100.0 35 ..................................... GAGCTACCGCGTCCGAGACTTTGAGGATGCGGAGG 1157945 37 100.0 38 ..................................... ACCAGTATATCGGAACCATCACCGCCTACAAACCGTGG 1158020 37 100.0 36 ..................................... CAGTTAGGCTGGTGGGATCGGACCGGACGTCCCGCG 1158093 37 100.0 35 ..................................... GGGTTGGCCAGTGGATTTCCGGCCGATCGTTTCGA 1158165 37 100.0 35 ..................................... GGTCAGACCTCGCTCTTTCATCGCCTGAACCTCAG 1158237 37 97.3 35 ....T................................ AAAGTAGAGATCCACTGTGCTTCTCGAGCGACAGC 1158309 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================= ================== 35 37 99.8 36 GTCGCAGGACACCGAAAACCCAGAACGGGATTGAAAC # Left flank : AATGGTGACGTTATCGTCAATCTCAGTGGTGGTGCCCGCGATATCCTTGTCCCGCTGACGACCGCGTCGTTTGTACACAGCGAACAGACCAATGCGACGCTGTCGTTCAGCGATATCGATGGTTCTGTTCGCGAACTCGAGTCGCCTGCGATGACAGCGTCAGTTCCGGATAATGTCGCTTCGACACTGGCCATGATCGTCGATCAGAACGAATGTGTTTCCGTACCAACCCTCACTGAGGAGTTGGATCGGTCGAAGAGTTCGATTACGCGTCACATAAGTAGTCTTGAAGAACAAGGACTTGTTCAAGCTGAGAAGCACGGTCGAACGAAAATCGTCCAATCGACGTTTGCCGGAGAATTGTATCTTCGCGGTCGCGGTAGCCAGTGAGCTTCATGGACTTTTTTAAAATCCGTGGACAGCCCCGGTCCATGAACGATAGGCAAACTATCGCTTGATGAAAAACGCTTTTAGCGCTGATCAGTGTATCTTAACCCCCT # Right flank : TATGTCGTTATAGTTTAAACAGTATAATGCAAGCGGTGGATGAGTATAGTTGTGATAACCGTTATCCCATTCGATCTAAGGCGTCGCGTCGGTCTTCAACCGGGGCTTGGTCGTATTTCATCGTCGTCTGTTCGCACTGATGCCGTAGTTGCATTTGTGCTGCTGCCAATCCTTCTTCTCGAGTCATGTACGTTCCTACGGAGTGACGAATCGTGTACCAACTAATCGTCCGATTCGTTGTATCAATGTCGGCAATTTCGCAAAGCTGTTGAAGGAGATATTTGAGCGACGACGACCGATACGTATTCCCTTCACGGGTTAACCAGAGTGTGTCTGTTTCGTCGTAATCCAGGTACGAGTCTCGCTCGTTGATCCATCGGTGGAGAATATCGGCAGTCCGTGAGTGTAAACTCACAACCCAGTTGTCTCGATTTTTCGAACTTTCATCTTTGGGAATCCGCAACACCTGATTGTCCACATCAACCCAGTACGTACGCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGACACCGAAAACCCAGAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //