Array 1 685761-693035 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072339.1 Prevotella nigrescens strain F0109 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 685761 47 100.0 30 ............................................... TTCAGAATCTTTTGCAGAGTATGATATAGA 685838 47 100.0 30 ............................................... AAAAGAAAGAAAACTATCTTTGGTAGAATG 685915 47 100.0 30 ............................................... TGCCGAATCGAACATGCAGAATTTTTCGTT 685992 47 100.0 29 ............................................... ATGTATTTATTTATAATATATTGAGGTAT 686068 47 100.0 30 ............................................... CCGTTTGGCGGGTATATCTTATCCCAAAGT 686145 47 100.0 29 ............................................... ATTGTTTTACATTTAGTTTTCCGTACTTA 686221 47 100.0 30 ............................................... CAAATTTCAGAACATAAACGCTGATAATAT 686298 47 100.0 29 ............................................... TAGCTGAATCACTCATACCTGCAAGTACT 686374 47 100.0 30 ............................................... ATTATGACACAAGAACAAAATTATAAATGT 686451 47 100.0 30 ............................................... CCTACAATCCTACAAATTAATTTTCTTTTT 686528 47 100.0 29 ............................................... GTATTAGGGCTATTGCGGACTTACCTGTA 686604 47 100.0 30 ............................................... AATGGAACAATATTTGATATTACAGAACCC 686681 47 100.0 31 ............................................... TCGAAGCTGATTTATCGAACCCCGTATTGGA 686759 47 100.0 30 ............................................... TCAATTCGTAACCAAGTGCATCAAATTCAG 686836 47 100.0 29 ............................................... CTAATGTATCATTTTTGAACTTGAAATCG 686912 47 100.0 30 ............................................... ATCTTTTGTAACATATTTTGAACAGTAAGA 686989 47 100.0 30 ............................................... ATTGCATATCTAAACCTTTCCTCACTCATA 687066 47 100.0 30 ............................................... ATAACTATTTTTTTTTGCCAGGCTTCTTAG 687143 47 100.0 30 ............................................... ATTTACGCAATATTCAATAACAGGCTCAAT 687220 47 100.0 30 ............................................... ACACTCGCCGTTTAGGCGTATAGCCAGGGC 687297 47 100.0 30 ............................................... AATAAGGGGCTAATAAATCATTAATTAAAC 687374 47 100.0 30 ............................................... TTGCCGATAGTAACACGTGATACTTCCACG 687451 47 100.0 30 ............................................... TTCAAGTTGGTAGCTTCATTTCTCATCACA 687528 47 100.0 30 ............................................... TCATACCCAGACGCTTGCCACGTGCAAAGC 687605 47 100.0 30 ............................................... ACGACTTGTGCCTTACCTTCTGCGAGCGGT 687682 47 100.0 30 ............................................... TGAACCTTAAGGCACAGATAGATTGTATAG 687759 47 100.0 30 ............................................... GTTATCTCGTATATATCTGTAAGTCCGCAA 687836 47 100.0 31 ............................................... AGGAGAGCTGAAGAAAGTTACTTCGGTCGAG 687914 47 100.0 30 ............................................... ATTTCTTTAAAAAAAATGGCTTCAAGGTGA 687991 47 100.0 30 ............................................... TAACCAATGTTATAACAAAAAGCCTCGTTA 688068 47 100.0 30 ............................................... AAAACCAAAATTAAGGCTTTCAGACCAAAT 688145 47 100.0 30 ............................................... TTGTAAAAGTGGCAATATCGTTACTATCTT 688222 47 100.0 30 ............................................... CAAAATAATTTTGTTTAACATAACGTTTCA 688299 47 100.0 30 ............................................... GATGGCAACATGCTGCCGTCTTACACGATA 688376 47 100.0 30 ............................................... TTAACACTACAAAATTACAACTATCTTTTT 688453 47 100.0 30 ............................................... ATTTTATGGAACATTTAAATTCAGAGTTAG 688530 47 100.0 30 ............................................... CACCAGCACCAACGCCAGCACCAACAGCAG 688607 47 100.0 30 ............................................... CTAAACGAAATTATCATAGATGGAAATACA 688684 47 100.0 30 ............................................... CTGATTTGGAGAATTTCACAGAAGAGGAAC 688761 47 100.0 29 ............................................... ATTTCCTAAGGGGTAACAATGGCACGGGC 688837 47 100.0 30 ............................................... AAATCCATCAAATGATACAAAGGCATACCG 688914 47 100.0 30 ............................................... CCTACCACTGGGAGGTATTCACTACTGACG 688991 47 100.0 30 ............................................... GAGCAGCTGCAATTCATTGCCTGGCACGGC 689068 47 100.0 30 ............................................... CCGTTTGGCGGGTATATCTTATCCCAAAGT 689145 47 100.0 29 ............................................... CAAAAGATAATAAAACAACGAGAGAGCCT 689221 47 100.0 30 ............................................... CGATTTCGAGACAACTTAGACCAATTAACA 689298 47 100.0 30 ............................................... GCTCGACATCATGGAAGTAAATGCTTCCGT 689375 47 100.0 30 ............................................... GAGGTCAAAGACGATAAGGATGGTCGTTAC 689452 47 100.0 30 ............................................... GGGCGGCAAAGTTATTAGGGTAGACAGAGA 689529 47 100.0 30 ............................................... GTTTAAAGGATTTTCTTACTCTTCTTATAC 689606 47 100.0 30 ............................................... CTTTCGTCCCGAGCCGTTATGCGCAAAGGT 689683 47 100.0 29 ............................................... TGATAAATGGTTATTGCAAGTAGACAAAG 689759 47 100.0 30 ............................................... CAATAGCCCTTGTAAAGGCGTCCATCAGAA 689836 47 100.0 29 ............................................... AATAAAGGTTTACCGTCGTCATATCCTGT 689912 47 100.0 29 ............................................... TTTAGCAGCAGAATTACACCAATCCACAT 689988 47 100.0 30 ............................................... TTCACATCAAAATAACTATTGACAAGAAAT 690065 47 100.0 30 ............................................... GTGATGGAATTAAAACCAACATTTCCTCAT 690142 47 100.0 30 ............................................... CTTTTCCTGCTTCGACACACTGTCACTAAA 690219 47 100.0 30 ............................................... CTTGATGAAAATATAAACAAAGTTTGGATA 690296 47 100.0 30 ............................................... AATTTAATTCATCGTCATGTACAACTGCGT 690373 47 100.0 30 ............................................... CCTTCTGGAATTGGAAAAGCTAATCTTACT 690450 47 100.0 30 ............................................... TATCTTGCCCTTGCAAAGAAGACCATCGCC 690527 47 100.0 30 ............................................... GAATTCACAAACTTAGCATTTACAACACAT 690604 47 100.0 30 ............................................... TTTATTCGACGAGAATTTCATATACCGAAA 690681 47 100.0 29 ............................................... AAAGACAGATGAGCAATTCTTCTCCTTTG 690757 47 100.0 29 ............................................... TTTAGCAGCAGAATTACACCAATCCACAT 690833 47 100.0 30 ............................................... TTCACATCAAAATAACTATTGACAAGAAAT 690910 47 100.0 30 ............................................... GTGATGGAATTAAAACCAACATTTCCTCAT 690987 47 100.0 30 ............................................... CTTTTCCTGCTTCGACACACTGTCACTAAA 691064 47 100.0 30 ............................................... TCATGTGCTTGCCATCAGTACAAGAAGTAA 691141 47 100.0 30 ............................................... TCGTTGGCTCGACACTAAGAGCGAGTTCTA 691218 47 100.0 30 ............................................... CTTGATGAAAATATAAACAAAGTTTGGATA 691295 47 100.0 30 ............................................... TTTGACAAAATAAAGTCCTTTTCCTGCTTA 691372 47 100.0 30 ............................................... AGAGACACATTTCAAAGAGAAGTTCATACT 691449 47 100.0 29 ............................................... TGTAGTAGACGTAATCACCATATAAATAC 691525 47 100.0 30 ............................................... GAACGTGTCAAAGTGTCATCCTCTGGAGAC 691602 47 100.0 30 ............................................... ATAATGATAAAAAATATCGTTGCCTGTCGC 691679 47 100.0 30 ............................................... CATAATTACTTTTAATACGACTGACCACTT 691756 47 100.0 29 ............................................... CCATAGACAAACTAGAGCCTCCACCACTA 691832 47 100.0 30 ............................................... CTTTGAAGAGCAGCCTTGTAGTACCCATCG 691909 47 100.0 29 ............................................... CTTTCGCAAATCTACCCACACGATAAGGG 691985 47 100.0 29 ............................................... TGACAAATTGGCTATGTTCTTTACAGCTG 692061 47 100.0 30 ............................................... GAATATTCAAAAGATGTGAATAAGGCGTAC 692138 47 100.0 29 ............................................... ACGCAAGCTATTTTGAACAAATTTGTTCA 692214 47 100.0 30 ............................................... GCCCGTCTACTTATTCTTTCGACCGCATAG 692291 47 100.0 30 ............................................... TCGCTTTTAATTTTGAAGCGCACCCAATAG 692368 47 100.0 30 ............................................... CATGCATCACGTCCATGCATGAAGATATTG 692445 47 100.0 30 ............................................... GAATTTCTTGATTATGCAGATGGAAAGACC 692522 47 100.0 30 ............................................... TGGGCGGCGTGGCTGCCGACGGCACGCCGA 692599 47 100.0 30 ............................................... GTAACTAATCGTATAATAATTGAATTATGT 692676 47 100.0 30 ............................................... TTTTGTTATGGCAACAAGCAAAGGATTTTT 692753 47 100.0 30 ............................................... GTTTCGTCTAAATTAATCTCTAAGTTATCA 692830 47 100.0 30 ............................................... TCTTATGGATATAAGGAAAAAGGAAGCTGA 692907 47 100.0 30 ............................................... TTGCACAGATGGTAAACATATGAAAGATAG 692984 47 87.2 0 ...............................GG.C....A..C...T | G,TC,TA [693014,693022,693025] ========== ====== ====== ====== =============================================== =============================== ================== 95 47 99.9 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGCAGACACAGC # Left flank : CGCTTTGGCGAAGAATGGTATGCCGAACTGGAAGCTGTTGCCGAGCAATTGCTGAAAGAATAGCTCAACCAACAAGATGTTTGGAAAGCACTGAACAGCCTGTTAAAACAGCTTCGGTTGCGTGCATCTGACGGTAAATAAGTGTAAATATTTTCCAAAAGAATAGCGATTGCTTAACAGTCTTGTTATCAGTGTATTATAAAACCTATTGTTTTGCATTCCAAAAGCGGCTGTTTTGCAACGTAAAACCTATGCTTTTACCGTGCAAAACAGCCGCTTTCGCAATGCCAAATCGAAATTATCGTTTTCTGTCAGAATTATTTTTATAAAACCAAGGCGATTTCCAGTATCTACGCCAGTTCGGGATAAGTTTAGGGTACTGTCTTAAACCCAAACCGGTCATTGGGAATACTTACCCGTGGTTAATGATGTAAGTTATTGAATAACATCCATTTCCAAAAATTATTTTCTAATGGTGGTCATTAGAAACAATATGTCGC # Right flank : TTGCAAGTCTATACTCTTAAGCACATAATTTCATAAGTATTTATTACCTTTGCATCATGAAGAGTCACCAATTATTACGTTGCATCTTTCCAGATGTACTTGCGGACTACTTTGATGTGGTCGATATTCACGAGAGTGTTTCCCAGTTTGACTTTTGGCTTGACGAGCGTAACTTTATGGAAAAGTCAGACCATAAGCTAGGCACCGTAAGCAGTTATGGTTTTACCAGCGAGCGTGTAATTCAGGACTTCCCCCTTCGTGGCAAAGCAGTCTACCTCCATGTTCGCCGTCGCAAGTGGCGTGACAGTTCCAACGGAGAGATATTTACTTATTCATATGATGATTTGACGGCTGAGGGCAGTAGACTATCCCCCGAGTTCGTTTCTTTTTTAAAAGAATAGAATTGAGTCCACTGCAGAGGGTATCGCAAGTATCGGTGCGCACTATGGCGTAAATGGCAAGCTGTTATCCACACAGTACAAGGAACATTTCAGTGATTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGCAGACACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 699175-694430 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072339.1 Prevotella nigrescens strain F0109 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 699174 47 100.0 30 ............................................... CAACGTACTTTATCCTATATTTGGGTTGAA 699097 47 100.0 30 ............................................... ACTCTTAAGTAACTGACATTCAAATATTTT 699020 47 100.0 30 ............................................... GCTAATAGAACTAATTTAGCTATTGCACGT 698943 47 100.0 30 ............................................... CCCTTGAAAAGATGTTGGAAAGAACGAGAG 698866 47 100.0 30 ............................................... AATACTAAATTGCAGTACTTGAGTTTAAGT 698789 47 100.0 30 ............................................... CGATTTTAAATTTAGGAATGACACGTTGGC 698712 47 100.0 30 ............................................... GAAGCAAGAAAAGGATTTTATATTGTCAAA 698635 47 100.0 30 ............................................... CATCGGGCAAGAGAAATGGTAAGACGAGAT 698558 47 100.0 31 ............................................... TCCCCTTGCCATTTTTTAAAATCTGTTGTTT 698480 47 100.0 30 ............................................... ATATCGTGCTTTGTGGCAACATAGTGATAA 698403 47 100.0 30 ............................................... TATTGTAGTATATTGATGATTCTCCAATAA 698326 47 100.0 30 ............................................... GAACTTCTTTCACAAAACTAGTTGGATTAA 698249 47 100.0 30 ............................................... ACCAGTAATTACCAATTTTATTCGTAAAGG 698172 47 100.0 30 ............................................... GATGTACCTAAGTTCTGAAGTTCAATTGGT 698095 47 100.0 30 ............................................... TACTTGTGCAGCTTGCATAGGCGCAGCATT 698018 47 100.0 30 ............................................... ACTATACAAAAACTGACAGAATTGTTTTAA 697941 47 100.0 30 ............................................... AAGAAGTCTTGCGTTATTCTTTAGATTTAT 697864 47 100.0 29 ............................................... CGCTCGAATATTTATTATCATTTTAAAAT 697788 47 100.0 29 ............................................... TACCAATGCTTCTTCTGATGTAACTCGTT 697712 47 100.0 29 ............................................... AAAGGTCGTAACCATTTCGGCTTAATTTC 697636 47 100.0 30 ............................................... ACACCAAGGAATAATTATACAAGCAAGAAA 697559 47 100.0 30 ............................................... TCCACAGTATGTAAATGGTGTGCCAAATGG 697482 47 100.0 30 ............................................... ATTTAAATTTGCAGAACTATATCAATCAAG 697405 47 100.0 30 ............................................... TGGATCGGGACTTTGATTTAGTAGCTTGTT 697328 47 100.0 30 ............................................... CACGAAGTGCGAGGACTTTAACCAGATTTT 697251 47 100.0 30 ............................................... CGATTTTAAATTTAAAAATGATACTTTGGC 697174 47 100.0 30 ............................................... CTCTAACATCTTTTCTAGTGCAAACATTGC 697097 47 100.0 30 ............................................... TTACCGTGCTTTGTGGCAGCACTCGGATAA 697020 47 100.0 30 ............................................... GGCTAACCCATTTAGGCTACTTGGTTACCA 696943 47 100.0 30 ............................................... CTTTTTCTCATCATCAAGTTCACGCTGACG 696866 47 100.0 30 ............................................... AGTGCGTAGTATGGGCGTAACGGCAAAGAT 696789 47 100.0 30 ............................................... GGAAATGGCAGATGTTCGATAAAAGCATCT 696712 47 100.0 30 ............................................... GCGTAGCGATTGACAATGCCACACGTGGTA 696635 47 100.0 30 ............................................... TAATCTCCATAATCTATTTGTTTAAATTGT 696558 47 100.0 30 ............................................... AGACCCCGTCGAATTGGCGAGGTATCAGAA 696481 47 100.0 30 ............................................... GCGTGAAACGCTTAGATACTCGCCGATTAG 696404 47 100.0 30 ............................................... ATTCTTAATTAACAGTTATTTTGACGTCAA 696327 47 100.0 30 ............................................... ACATTCGCACACGGCATTTGACCGTTGATG 696250 47 100.0 29 ............................................... TCAAATCTCTTTATCATACCTAATTACTT 696174 47 100.0 30 ............................................... TGGTGGAAAGGCGAGCATAGCAGTTGTGGG 696097 47 100.0 29 ............................................... TGTCGGGTTTGTACTGCAAGGTGCGAAAC 696021 47 100.0 30 ............................................... TTTTATCTTCAGGCGGAGATTCCGTACACT 695944 47 100.0 30 ............................................... ATCATCTAATGGACTTCGATTTGACACTAT 695867 47 100.0 30 ............................................... GGTCAATTAAAAGGTCTGGAACTGAAAGTG 695790 47 100.0 30 ............................................... AAAGCAAGCTGGTGTTAGTATTCAGGTGGG 695713 47 100.0 30 ............................................... CGCTTCACAGCAGGAACTGTACAATGCTGA 695636 47 100.0 30 ............................................... CACGTGAAACGAATGCCCAGAATTACCAAA 695559 47 100.0 30 ............................................... ATGTTTTAAAAATTAGTTAATTATGGGATT 695482 47 100.0 30 ............................................... AGGATATGTTGGGTTATAAATATTCTTATG 695405 47 100.0 30 ............................................... ACGTTGCGCGTGCAGCCATAATAGGTTAAT 695328 47 100.0 30 ............................................... CGCTTGATTTCAATATATGGCTGTTCGCTT 695251 47 100.0 30 ............................................... GAATTGTACGAGGCACTCAACAAGGCTAAC 695174 47 100.0 30 ............................................... AGGTACGGAATGGCGTTATATAAGTAAGTA 695097 47 100.0 30 ............................................... GTATCAGCGTGGTTTAATGTATGATACTCC 695020 47 100.0 30 ............................................... AGAAGTTCCATCAATAGAACTGTTGGCAGT 694943 47 100.0 31 ............................................... CTATGCACCTGTTAATGCTGAAAATGATTGA 694865 47 100.0 30 ............................................... TAATGCGCTAGCAACAAATCTACATAACGT 694788 47 100.0 30 ............................................... TGTTACCCTCAAAGATACCTTACAAAATGG 694711 47 97.9 30 ..............................................T GTTTTTATTTGTTTAACGATTGGGGAGGAT 694634 47 100.0 30 ............................................... CGTATAATTAGGCAAGTGTTGCGCCCGCTA 694557 47 100.0 30 ............................................... GGATTTTGAAGTGTTACATTCTTTGCATCA 694480 47 78.7 0 ........................G.C.G..A...C.C.G.TG...G | CC,GG [694446,694453] ========== ====== ====== ====== =============================================== =============================== ================== 62 47 99.6 30 GCTGTGTCTGCTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Left flank : CTGAAGTATTGGCAGCTGCCACAGAACATTTCCGAAAGGAAGCCATTCGGTTGGTAGAACACATGCCACTATGGACGCCTGCATTAAAGAACGGTCGTCCTGTCAAAGAGAAAACAACCATAGTCATAGAATTCGATCCCTATTATAAAGGACCCAAAAAATAATTAACTTGCAATATATAGTGGAGCAACGAGAAAGTATCTTACTTGTTTTTCAGCAACCACTTAAAAGATTATTCTTTCTTTTATGTCTGCATACAGAGATTAAAGTTATAAAACTTAAGGATAAGAAAAATAAGAGTGCATTGAAACTAACGTTTTAGGGTACTCTCTTTTGTTTATTTTTATATCATTAAAGTGGTTACTATTTATAAAGCTGGATATCGTTATTGAAAGAATAAAGTCCCATTCTTACCGAGTGTGACTTTATTCTTTCTTGCATTTTTCTTTTTCCCTAAGCCTTCGTAACATCGCTGGATATCACCATATTAGGCTATTTGG # Right flank : TCTATACTCTTAAGCACATAATTTCATAAGCCTATATAAAAAGAAAGGAATATCTGTCACTCCTCTGAACTGTGCCCTGAATGCCTTGACTTTAGCATTGAATGACTCGGCATTTGCATTCGTAGCTCTGTTTACAAAGAAATTGAGTATGGTTTGATAATGATTTTCAAACGTGTCAATCACCGTGTAGAAATTGTCCACTCCCAGCTCTTCAACCTCATTGAACCATTTTGCCAGCTTCAGCCTTGCAGCATCCTTGATGCTCTTGATGTTATAAATATCGGTAAGTTTCATAGCCAGCTCATATGCCTTTTTCAGTGTAGGATAATGTTCAAAGATGATTTGTGCCCTGGCTTTCTGTGCTTCAGTCCACCTGGTCCTGTGCTTGGTCAATATGAACTTTGCTCTGGCGAGCAACTGCTTACGCGTGTCACCATTGCTGTATCTAAATGGTATATATTCCTTTCCCTCACTTTTAGCTTCTTTTATCTCCTCATTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGTCTGCTAATGCAAAGATACTAATTTTAAAGCTAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //