Array 1 433254-434746 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNZF01000002.1 Escherichia coli strain HH03CH NODE_2_length_514516_cov_214.588019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433254 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 433315 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 433376 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 433437 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 433498 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 433559 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 433620 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 433681 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 433742 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 433803 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 433864 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 433925 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 433986 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 434047 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 434108 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 434169 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 434230 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 434291 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 434352 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 434413 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 434474 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 434535 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 434596 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 434657 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 434718 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450248-450885 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNZF01000002.1 Escherichia coli strain HH03CH NODE_2_length_514516_cov_214.588019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 450248 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 450309 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 450370 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 450431 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 450492 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 450553 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 450613 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 450674 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 450735 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 450796 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 450857 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //