Array 1 978-3231 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFH01000354.1 Salinivibrio sp. MA427 scaffold354.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 978 28 100.0 38 ............................ GAGAGGCGGCTGCGCCGCCAGNGCCAGAAAGAGCATCA 1044 28 100.0 32 ............................ AGCTGATAAACGGACGCACTACCAACGCAGAA 1104 28 100.0 32 ............................ TTCGTAATACTTAGCTACCGTGTGAATTTCCG 1164 28 100.0 32 ............................ TTCGTAATACTTAGCTACCGTGTGAATTTCCG 1224 28 100.0 32 ............................ GGGAACTAACGCCAAAAGAAGCCTGTGAAGTG 1284 28 100.0 32 ............................ TATCAGCTTGGTCAGCAAAAGCGCACCGACTT 1344 28 100.0 32 ............................ TGTGAGGAAAAAAGGCCAACCCGATCAATACA 1404 28 100.0 32 ............................ TGCGGCTTTTACGTCATCACGCAGGTTCGCTT 1464 28 100.0 32 ............................ TTTTGGCGTAACATTCAGCTCCCACGCTTTTA 1524 28 100.0 32 ............................ ATTAAGCGTCGGTGGGGCATTCACATCACCGG 1584 28 100.0 32 ............................ CATATAATCGGTGATGGTGGCGGTGTCTGATT 1644 28 100.0 32 ............................ TTTACCAAAGCCAACGCGCCCGACGAAACCAC 1704 28 100.0 32 ............................ AGGGGGCGAAACAGGGGCGGCAATCATGGCGG 1764 28 100.0 32 ............................ TTTTTAACTACACCTACGAACCTAGCGCCTTT 1824 28 100.0 32 ............................ GTAGACATGGCCAACGACATGGCGGCACAGCA 1884 28 100.0 32 ............................ TTAAATCGCTAACTCAGGACGCACCACTTCTA 1944 28 100.0 32 ............................ AACGAGGACGGCGAGCCAAACCCGCACGTACA 2004 28 100.0 32 ............................ ATTTCAGACTACCGCGCGGCAGTGCTGGATCT 2064 28 96.4 32 ........T................... GTTTCGCGGTGGCCGTCGCGCCAAGGCCGCGC 2124 28 100.0 32 ............................ ACACCATAAACCTGTTTCAGCGCGGCCAAGAA 2184 28 100.0 32 ............................ ATCCAAAAATCGCGACACTTCGCGGCCGATGG 2244 28 100.0 32 ............................ GGTTAAGGGTCGGCATCTGCCCGTGTCGGGTC 2304 28 100.0 32 ............................ AGCAAAAAACCGGCATTCCCGCAGAACAGATC 2364 28 100.0 32 ............................ CATCAATCAAGCTAGCTGAACGGGTAGCGCCC 2424 28 100.0 32 ............................ CGGTTTGCTCGATACAAATGGCGTTGAGATCT 2484 28 100.0 32 ............................ GCCACAAAATCAAAAACCTGTCCGGTTGCACC 2544 28 100.0 32 ............................ CAAAACGGGCAAAGGTATGAAGAACTCATCTT 2604 28 100.0 32 ............................ TCAACGAGAAAAGGCACCGGTTATAAGCTGGT 2664 28 100.0 32 ............................ TGCAAGCGCTGGCCTGAGTGCCAGCACTCAAC 2724 28 100.0 32 ............................ ACCCTTGGTGAGAGACGACAAAGCGGCGTTGT 2784 28 100.0 32 ............................ ACACAGCGACGCTTTCTGAAAGACATTTTTAC 2844 28 100.0 32 ............................ GACCACCTACATAGCCACAGCCGTCTTTACGG 2904 28 100.0 32 ............................ AGAAAGCTAGTCCTGATAAAGCTGGCTGATAA 2964 28 100.0 32 ............................ TTTGACGAGCAAACGCGCCAACGTCTTTTTTG 3024 28 100.0 32 ............................ TCATCAAGCATCTTATCCAGCTTGCCGGTCGC 3084 28 100.0 32 ............................ ATGCTTTGCCGTTGGCTGGTTCCATGCTGTTG 3144 28 100.0 32 ............................ CGCCGAAGAATGCAACGCCGAGGAATGGTTCA 3204 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 38 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAAGACTATGCCTACTTTAAACGTTGGAACTACAAATCGCCGCAGAGACTGTATAAAAACCTCGACCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGCGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCGCTGCCTTTTATTCAAGTGACCAGCCTTTCAAGCCAAAAACGAGCAGGGCGGCCCAATACGGAAGAGTTTGCTTTGTATATCGAGCGGGAGACTACCAAACAGCCGCCAAACAAGGACCAACCATTCACCTGTTATGGGCTCAGCCGACGAGAGTCCGACCAGCAATCTGCGGTGCCGTGTTTTTGAGGGGAAACCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAAACAGGAAATACAGTTGCTTACGGCAGGCCATTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAATGGCCTGTTGTTACTGACGATTATTACGTTATTCTATT # Right flank : AAAAGGTGTATCAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2863-1033 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFH01000406.1 Salinivibrio sp. MA427 scaffold406.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2862 28 100.0 32 ............................ AACGAGAACGGCGAGCCCAACCCGCACGTTCA 2802 28 100.0 32 ............................ TGTAGCCGTTTGACCTGGCCGACGGATTCAAT 2742 28 100.0 32 ............................ AGACTGAAAGTGCGTTAATAATCCGCTCCTCG 2682 28 100.0 32 ............................ TATCAGACCGCGCGCGATCCAGAGAGCAAACG 2622 28 100.0 32 ............................ CCGAGCAATTACAAACGCTGCTTGATGATGCC 2562 28 100.0 32 ............................ TCACAGTCGAGACGCTTGGCCGTGAGACACGC 2502 28 100.0 32 ............................ AATCGGCTCCAAGCTCTGCGGCGTGTAAATCG 2442 28 100.0 31 ............................ TTCCGCAATCGACGATGCAACACGCGATTTC G [2417] 2382 28 100.0 32 ............................ GGTCTTGGTTACGGCCAGAAAGCAACTGTACA 2322 28 100.0 32 ............................ ACGCTGATTGCGGCGGATGAAGTCGAGCTGGT 2262 28 100.0 32 ............................ CGGCACCGCGACCGTACACGCGCTTTCGTCAG 2202 28 100.0 32 ............................ AATTGTGACAGGCGGTTCTCGGAGATCTTTTC 2142 28 100.0 32 ............................ ACTCCGATTCATCCGTAAGCGCAACAGGCTTA 2082 28 100.0 32 ............................ AGCCTCAGCAAGGCAACCGCAGACGCTGAGAC 2022 28 100.0 32 ............................ GTCGAGAAAGCGCGAGACCTCGCGGCCGATGG 1962 28 100.0 33 ............................ TGTTAGTGATTGATTCGTTGGTGGTTCTTCGAA 1901 28 100.0 32 ............................ ACGCAGCGTCTCACCGTGCAGCGCATTATTGA 1841 28 100.0 32 ............................ ATTGCCAAAGACGACGAGCGCGAATCGCTTGA 1781 28 100.0 32 ............................ TATCGTGTGACAACGAATAAGCCCAGGGCTAA 1721 28 100.0 32 ............................ ATCACGACAAGCCAAGCAATCAACATTAATGC 1661 28 100.0 33 ............................ CCATAAATTCAGCTAGAAACACGAGGGAAGGTG 1600 28 100.0 32 ............................ CTGACCGATACTCTTGCGGTATCTTCACCATT 1540 28 100.0 32 ............................ AGGAAGAAACTGCCAAGATCGAGGCGCAGGGT 1480 28 100.0 32 ............................ AATTTCATCCAAATCAGTAACGATGCGGTCAG 1420 28 100.0 32 ............................ TTCCAAGTGAGACACACGGAATGGCGTACAAA 1360 28 100.0 32 ............................ TAATGCCTTTACTTTTTTGGCCTGTCATTGCA 1300 28 100.0 32 ............................ GTACAGTCGATGCCGGTTATTGTTCTGGTCGT 1240 28 100.0 32 ............................ GCATAGCGCATACGCATCACGCACTAGCGTGT 1180 28 100.0 32 ............................ GTCCGCGTAGTACACTGACCGCACGATAAAAT 1120 28 100.0 32 ............................ TTGTTACGCGCGTCGATGTATTCAGCTAAATC 1060 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAAAAAAGGTGTATCAATGACATTCTGAAACATC # Right flank : TCAGCGAACGGCGGCGGTAACAGTTATTCNCAAGTTTGTACGATCGAGTTGGCGCTTATGCCGACCTACACACCATTTTAATATCGGCGGTGCCATTGGCTTATATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACATTGGCGTAGGTGACACAAGCCCCAGCACGGTGTTGGATATGTGATAACTGTCAAAGGGCGCCTGTCACGATCGAGGTTAATTGTTGGCCCCGATGTCGGATGGCGCGCGGCGTAAGTCATACCAACTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCATAGGCAGTTTAGACACTGAAAATAATTGTTTTTTTGATGTCAGTTCATTGTTAGTGTGTCGTGGCATCGAGGGAGTAGGGGATGGTTCAAGGTCAATAAAAGCGTATGACTAGCAATGACCATACACGTCAATTTGACGCATGTTTATAGCCAAAGTTAAGCTTGCAGTTGCATGCTTTTGCATAGCTAAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1604-796 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFH01000436.1 Salinivibrio sp. MA427 scaffold436.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1603 28 100.0 32 ............................ CAGAGGTGGGCGTACAGTTATTGACAGAACTC 1543 28 100.0 32 ............................ ATAACCAATAAACACATCGAGGGCGAAATACT 1483 28 100.0 32 ............................ TCTGAATGGAATAGAGTTGCTCCGTCTTCTGT 1423 28 100.0 31 ............................ TGATTGCTTTTTGATTCGCGCCCTCCACCGC 1364 28 100.0 32 ............................ ATCGAGATGACGTAACACATCGTCGGACATCT 1304 28 100.0 32 ............................ AATGAGTACGATAAACATCAACCGTTTTCGTT 1244 28 100.0 33 ............................ TATAACTCTATCCCCGACAACGCCACGATGGTT 1183 28 100.0 32 ............................ TGAAAGCCATGACGGTTGAGTGGGAAGGTATC 1123 28 100.0 32 ............................ TGGACCATTGTTAGAGCGTCTTGGTCCACATT 1063 28 100.0 32 ............................ ATAAACATGGAAAGCAGCGAGCAAAGCAGAAT 1003 28 100.0 32 ............................ AAGCTAAAGCGGAAGCAGAGCGCAAGATTCGC 943 28 100.0 32 ............................ CAACAGATTGGTAACGATCTAATTCGTCTTAT 883 28 100.0 32 ............................ TGTTCAACTYCGCATCGGCAATGATGGCACTC 823 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTATTCTAT # Right flank : AGATTAACGACCTGGCCGTCTGTCACGATCGAGGTTAATCGTTGGCCTCGATGTCGGAGGCGCGCAGTTCACTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACGATTTTAATATCGGCGGTGCCATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCGGCACGGTGTTGGATATGTGCAAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATACATGACAGACATCGCACTGGCGCTTGTCCGACCTACACACSATTTTAATATCGGCGGTGCCATTGGCTTACATTGGTTATCGGAACAGCCACTTTTGGCCCGATGATACCATTGGCGTAGGTGACACAAGCCCCGGCACGGTGTTGGATATGTGCAAATTGCCAACGGGCGCCTGTCACGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //