Array 1 164261-162767 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMQ010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2389 NODE_2_length_606833_cov_57.2542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164260 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 164199 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 164138 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 164077 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 164016 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 163955 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 163894 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 163833 29 100.0 32 ............................. CAACCGAGCTTATCACGAAGCTAGGCGGCAAT 163772 29 100.0 32 ............................. TATGAGTATATTGATTTATTTGAGACTTCTGC 163711 29 100.0 32 ............................. CCGGTAAATTTAATGGCGGATTTAATTAAACC 163650 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 163589 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 163528 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 163467 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 163406 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 163345 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 163284 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 163223 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 163162 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 163101 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 163040 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 162979 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 162918 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 162857 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 162796 29 100.0 0 ............................. | A [162768] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181830-180825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMQ010000002.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain 2389 NODE_2_length_606833_cov_57.2542, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181829 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 181768 29 100.0 32 ............................. ATTGGAACAGAATGGGTTGTCTTTGGTTTCGC 181707 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 181646 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 181585 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 181524 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 181463 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 181401 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 181340 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 181279 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 181218 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 181157 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 181096 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 181035 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180974 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180913 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180852 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //