Array 1 9214-7598 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPH01000015.1 Salmonella enterica subsp. enterica serovar Infantis strain 137 NODE_15_length_104899_cov_15.9508, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9213 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 9151 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 9090 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 9029 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 8968 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 8907 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 8846 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 8785 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 8724 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 8663 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 8602 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 8541 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 8480 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 8419 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 8358 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 8297 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 8236 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 8175 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 8113 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 8052 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 7991 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 7930 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 7869 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 7808 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 7747 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 7686 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 7625 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8681-10578 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPH01000042.1 Salmonella enterica subsp. enterica serovar Infantis strain 137 NODE_42_length_38461_cov_15.4487, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 8681 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 8742 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 8803 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 8864 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 8926 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 8987 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 9048 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 9109 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 9170 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 9231 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 9292 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 9353 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 9414 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 9475 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 9536 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 9597 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 9658 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 9719 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 9780 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 9841 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 9899 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 9960 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 10021 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 10082 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 10143 29 100.0 32 ............................. CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 10204 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 10265 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 10326 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 10427 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 10488 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10549 29 93.1 0 A...........T................ | A [10575] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.8 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //