Array 1 4880-7008 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYL01000295.1 Xanthomonas fragariae strain ICMP 13779 isolate ICMP 13779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4880 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 4940 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 5001 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 5061 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 5121 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 5181 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 5241 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 5301 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 5361 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 5421 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 5481 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 5541 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 5601 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 5661 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 5721 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 5781 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 5841 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 5901 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 5961 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 6021 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 6081 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 6141 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 6201 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 6261 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 6321 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 6381 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 6441 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 6501 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 6561 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 6621 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 6681 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 6741 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 6801 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 6861 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 6921 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 6981 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACGACCTGCCGGGAAAACAGATCGATCACAACAGCCAGGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 494-700 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYL01000328.1 Xanthomonas fragariae strain ICMP 13779 isolate ICMP 13779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 494 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 554 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 614 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 673 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CAAGCGCTCATCTTCCATGGCGCGCTCACTGTTGGGCGAGCACAACCAGGCGTAATAGCCCGACCGGTTGACCCGCAATACCCGGCACATCGCACACACCCTGAATTCCCCACAGTGGGCTTGCATGAAGGCGTACTTTGCCCTTACCCCTTGGCAAAGTACGCGGCGGCCTTTTTTAGGATGTCGCGCTCCTCGGTCACTCGACGCAACTCTGCCTTCAGCCGCCGAACCTCGGCGCTCTGGTCCACCTCGGCGCGCTGCACCACGCCAGGCTTGCCGAACTTGCGCAGCCAGGCGTAGAGGCTGTGCGTGGTGAGACCCAGTCGCTCCGCGACTTCTGCCACCTTGAAACCACGATTGGTCACTTGCCGGACCGCCTCGATCTTGAATTCATCCGTATACCGCTTGCTGCTCATGGACACCTCCGAATTGACCATTTTCCATGGCCTTGAGATGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //