Array 1 774913-775281 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP035450.1 Streptococcus pyogenes strain emm93.4 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    774913	    36	 100.0	    30	....................................	CTATCTGGATCCGCTCCCCAAGCAAGTTCA	
    774979	    36	 100.0	    30	....................................	GCTCAGATGGACGTGCTTATTATACATTTA	
    775045	    36	 100.0	    30	....................................	AATATACCCCAAGTTTAATTTTAGAAGCAA	
    775111	    36	 100.0	    30	....................................	GACATATTAACGTCCTTTCTCCTGCTTTCC	
    775177	    36	 100.0	    30	....................................	GTTGTCTATTCTAACAATGATACCAGTGAT	
    775243	    36	  97.2	     0	................................C...	|                             	T,TT [775272,775276]
==========	======	======	======	====================================	==============================	==================
         6	    36	  99.5	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTCATTTTTGTCAATAGTGGAGCTTATCTAACAAAAGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  CATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACTTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAACAGTAGAGTGATGGAACAAACATTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGAGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCTTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAACTTACATGACAAGTGGTCCTGTTTTAATTGGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTATTTTTAACATGGCGTATGGGTCTCATTCAAGAGACTCTGCTAG

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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