Array 1 52-935 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETV01000033.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285 isolate FDA_2010_240_Lunch Meat-IA-4 SEEM8285_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 113 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 174 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 235 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 296 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 357 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 418 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 479 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 540 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 601 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 662 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 723 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 784 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 845 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 906 29 93.1 0 A...........T................ | A [932] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGCCGGTCACGATTGTTCACCCCAAAAGCGGACAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 321138-322203 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETV01000011.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285 isolate FDA_2010_240_Lunch Meat-IA-4 SEEM8285_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 321138 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 321199 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 321260 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 321321 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 321382 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 321443 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 321504 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 321565 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 321626 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 321688 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 321749 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 321810 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 321871 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 321932 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 321993 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 322054 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 322115 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 322176 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 338339-338794 **** Predicted by CRISPRDetect 2.4 *** >NZ_AETV01000011.1 Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285 isolate FDA_2010_240_Lunch Meat-IA-4 SEEM8285_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 338339 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 338400 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 338461 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 338522 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 338583 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 338644 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 338705 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 338766 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : ACCAAAGCTCGATATCAGTCAATTATGGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //