Array 1 1983285-1980986 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDV01000008.1 Streptomyces cinnamonensis strain NBRC 15873 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 1983284 29 89.7 32 G..........CG................ TACGTGCAGGACACCCCCGGCAGCGACATCGG 1983223 29 100.0 32 ............................. TTTCCGGAGGCGACGCGGTTGGTGACGAACAC 1983162 29 96.6 33 .......G..................... ACCTGCAGCACCGCGAGCACCTGCAAGTCCTGC AG [1983140] 1983098 28 96.6 32 ....................-........ GCCGGCCGCCCCCTCCGCGGCGAATGCGGAAG 1983038 29 96.6 32 ....................A........ CTGAGCTCCAGCTCCGGCGCGTCCGTGACGAA 1982977 29 96.6 32 ................T............ GTCCCGTCCGCCTCCGGGCCGCTCGCGCTGCC 1982916 29 96.6 32 .............T............... GCCGGCACCGGGTACGAGGACTTGAGGCGGGA 1982855 29 100.0 29 ............................. CTCCGGGTCTCGATTCCCGCCGTCTCGGC 1982797 29 79.3 32 GA...G.T.C..............C.... TCCAGCCCGACGAAAGGGGAAGCCATGCTGCA 1982736 29 93.1 32 ...T................C........ CAGTAGGAGCCGGTTTCCGGCGCCGTTCGGCC 1982675 29 100.0 32 ............................. TCGACCTGACCCGCCGCCGGGAACTGCTCGTC 1982614 29 100.0 32 ............................. TCTGCCCCCGGGGCTGCGGCTACGCTGGAGCC G [1982593] 1982552 29 100.0 32 ............................. AAGCTCCTGCCGTCGATCGGGCGGTTCAGCGG 1982491 29 96.6 32 ..............T.............. GGGCAGGAGGAGTCGGCATCCAGGTCCAGGAA 1982430 29 96.6 33 ........T.................... ATCGGGCACCTGGCCGTGTTCGATGCGCCTTCG 1982368 29 100.0 32 ............................. TGGCTCGGCGCGATCCCCGGTCACCTCTACAA 1982307 29 96.6 32 ..............G.............. GCCGCTGCCCAGACGAGGATCGGGCCCGTCAG 1982246 29 93.1 32 ............T....A........... CACGTGCCCTGGCCGCCGCCGACGTTCATGCT 1982185 27 86.2 30 ...........-...A....-.......A CCGCGGCTGGCGGAGAAGTCGGTGCCGTGG 1982128 28 89.7 32 ........-........A......C.... GCCCTCAAGGCCGGCGGATCCCTGGCCGAGGC 1982068 29 89.7 32 ................T....T.T..... ATCGCAGCCCCGCTGGATCAGCTTCGCCCCTG 1982007 29 96.6 32 ..............T.............. GAGACCGGCATGCACGACATCAGGAACATCTT 1981946 29 96.6 32 ......................C...... AAGGCCACCGTGCGGTACGCGTGGGGCCGCCC 1981885 28 93.1 31 T.......-.................... GTCCCGAGGTGGCATCGGACTGCCTGGTGCC 1981826 29 100.0 32 ............................. TACCTGGCGAACCTGCGGCCGGACGGCTCGGG 1981765 28 96.6 32 ........................-.... GCCTTCTGCACCGCCCGGTCCAGGCCGTCCCC 1981705 29 93.1 29 ................T........C... GCCACCGGCGGCGGTGGTTAGAGCGGCTG 1981647 29 93.1 32 ......T.......T.............. ACCAAGGGCAAGTTGGTCACGATCGAGGCGCT 1981586 29 93.1 32 TC........................... TGCGGGGCGCCAACGTGGTTCAGCACGTGCGG 1981525 29 100.0 32 ............................. GCGGTCGTGATGCCGGTGACCGTGCCAGCCGT 1981464 29 93.1 32 ......A.................A.... TTCTGGGGCCGGATCCAGATCGGCCCGGACGT G [1981448] 1981402 28 89.7 32 ........T.A......-........... ATGCCGGTTCGCGCGGCGGACGACGCCTGCGT 1981342 29 93.1 32 T.............T.............. ACCGACCTGTCGCTGGACCTTGCGGGCGCGCC 1981281 29 93.1 32 .A...............A........... ATCCGCTGGTGCACGAAGTAGGGCGCCTCGAA 1981220 29 89.7 33 ........T..C..T.............. TGCGCCGGCACCCGGCGGGTAACGACGAGTCCG 1981158 29 96.6 55 .......................A..... TCCTGGGCGGTGGTCTGCTCCCCGCACCCTCAGTGGCAGGCGCTACCGTTGCCGT 1981074 29 96.6 32 ...G......................... CACACCCTGCGCAGCCTGGCGGAGGCCACCTT 1981013 28 86.2 0 .......A.......A......-.A.... | ========== ====== ====== ====== ============================= ======================================================= ================== 38 29 94.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCTGAGCTTGCCGGTGAGGAGCCGCTCGAACGTGAACTCCGCCTCCCCGTCCGCGCTGGTGGTGTCGACGAGCCACGCGGTCTGGAGCAGGTGCTGGAGCGCCTTGCGTTCGGTGTCTGCGGTGAACCTGCTGGCCTCCCCGTCGTAAAGGCCGTCCTGAGGCCGCGGCGCGAGGTTGAAGTCCCCGCAGATCAGCAGGGCCGCCCGCCCTCGGCGGCGGCAAGCGTCGCGAGCTCGCCAAGCTGGGTTGTGCGCGCCGCGCTGGTATAGGCGTCGAGGTGGACCTGAAGGACGGTGAGCCAGCCCAGTTCCACTCGCTGCGCCCAGCCGGTCGGTGCGGAGGCGGATGTCCTCGCGGACCCAGGTGGCGAGGTAGCCGTTCCCGCCCGCGAGGACGTACCCGGGCAGGAGCGGCGGGCGCCGGTCGACGGGCTTGTACGGCTCCTGCGCAACCCGCGAGGTGGTCCGGACGCGTCAGCGTAGGGGATGATGCTGCCCTC # Right flank : CACCGGCCACCTGCCCATGGTCGAAAGCCCCGGGGAATGGCAGCGGCTCATCACCGACTTCCTCGCCGAGCACGACGCCTGAGAGACGCACGACCCCGAGCCCGAGGGAGGGGTCCCGGGCTCGGGGTGTGGGGCCTGCCGGCGTCCGCCTACTTGAAGGTGACGTCCGAGCAGGAGTAGAAGGCCTCCTCGCTCTGGAAGGAGCCGTCGGGCCGCTTCAGCCCGTGCCAGATCGTGTAGATCAGGTGCTTGCCCTTCTTCTCGGGGAGCACCGTCTTGAACGTGAACGCCTTCGCGCCGAGGAAGCCCGAGGGGGCGGCCGTGGCCGCGGTGTTGTCAGCGCTGAGGAAGGGGGTGTCCTCCAGGTCGGACCACTTCAGCGGCTTCTTCGGGTCGTAGCCGTCCTTGGTGACGTACATCTCCATGCGGTACGGGTTGTGCAGCGCGCTGATGTCGTAGCGGAGGTCGTACTCGGCCCCGCCGGGTAGCGTCGTCGAGGG # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1988813-1988541 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDV01000008.1 Streptomyces cinnamonensis strain NBRC 15873 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1988812 29 96.6 32 ....................T........ CTGAAGGACCGGATCACTCTCTGCCCCGACTT 1988751 29 89.7 32 ...T..T.......T.............. ATGTCGCCGATGGTCACCTCGCCGGAGTTGGC 1988690 29 96.6 32 .....T....................... ATCACCCGTGCCGCGGACCTTGCCCAGATCGG 1988629 28 96.6 32 .....-....................... CTGCGTGAGGCGACCATGACCACACCTGACTT 1988569 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TCCGAGGGACTGGCGTCGATCAGACCGATGGCAAGGGCACGGCTGATGGCCAAGCGGTTGGAGCCCCACCGGTCCCTCGCCCCGGTAGGCGCGCTACTGGAGCGCGCGAAGGGCTAGCGGGTGGCCCGGTTGATCCAGTCCAGGTACTCGGCACGGCCGGCGTCGATCGTGAACGCGATGACCTCAGGCGAGTCATAGGGGTGGTTGTCCACCAGATGCTTCTCCAGTGCCTCGCGCCGGTCACCGGTCGTACGAAACGTCACCTGATACTCGATGCCCTCGCAGACCTCCCCGAGATGGCGGTACGTCGTTTCAATGGGCCCGGTCACCTGCCCGGAAGCGGCTAGGCTCGCCTCCACCGCCGAGCGCGACAACTTACGCGCAGCATCCTGATTGTCCACGGTCGTGATTACGATCAAGAAGTCAGCCATAGGGGCAACGTACCCACCCAACCAGTCGCACTCATATAGGAGGCAGTGAGACTTTGGGAGCACCGGCAC # Right flank : GACACTGGCCCTTCGCCTGGGTCATGGCCGCGCTTTGACTCCTACCGTTCCGAGCCGTCCCGGTCTTCCCCAGCGCCCTCGTCGCTGTCTCCGAAGATGGGACGAAGTACCTCTCACAGGTCGAGGTCGAGGCGCTGAGCGGGGATGGACAGAGACCGCTGGACTTCACTGCTGACGTTGGTCGCCGTCGCTCGCCACTCCGCGACGAAGGGGTCGGCTTCCTGGCTGCTGTAGACCGTGATCGGATCCAGCGTCACGGTCTCATGGGGACGAAGGTCCACCGGAACGAAGCGGATGAGGGTGCGGTCCTCCTGCTGCTCGATGTCTGGGGAATGCAGGGACGGCAGCTGGTAGGCCGGCGGCTGCACCCCGAGCATCCTCCGGTAGCCGCCGAGGGCGGGGATGGTGCCCGCTCCGTATTTGGCTGGCTGGGAAGGCCAGTCGATCTCTTCGTCTGTGTCGGCCGTGACATGCGCCGAAACGGTGTCGGGGAGGCTCAG # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.90,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1996314-1995202 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNDV01000008.1 Streptomyces cinnamonensis strain NBRC 15873 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 1996313 29 100.0 32 ............................. TTCCACCATGCCGTCGCCAGCGTCCTTGATCT 1996252 29 100.0 32 ............................. ATCGTGCCCTCGCTCAACAAGGCCGCGGAACA 1996191 29 100.0 32 ............................. GGGACGCGGCCCTTCGAGCCGCGGGCGGACTT 1996130 29 100.0 32 ............................. GCCGGCACTCTCCGCACGAACCGCACCGGCAA 1996069 29 100.0 32 ............................. TCATCCAGATGGCCCGCAAGTGCGGCATCAAG 1996008 29 100.0 32 ............................. CACGCACAAGGAGGAAGGAAGCGGCGTGAAAG 1995947 29 100.0 32 ............................. TCGACGGGCTGCGGGCCGACTCGCTGGCCGGG 1995886 29 100.0 32 ............................. GCGTACGTCGGCTGCACGCTCTCGGGGAGCTG 1995825 29 100.0 38 ............................. TTGGCGTGTGCGGTGCGGCGCTGGGCCTGCTCCTGCTC 1995758 29 100.0 32 ............................. GGTACCGCCACCATTGCGCCGGAGGCATTCCG 1995697 29 100.0 32 ............................. AGACATCATGCGCCTCGCTTCATCTCAGGAAT 1995636 29 96.6 32 ..............T.............. CCCTCTGCGGGCCCGAGCACCGCGTCGCGCTG 1995575 29 100.0 73 ............................. TACAGCGGGCGGATGGTCCGTACGAGGTGCAGCCGCCCCCCGCACCGTCAGTGGCAGGCGCTACCGTTGCCGT 1995473 29 93.1 32 G............T............... TGCTGCAGGGACTTCTCGCCGGCCTCGGAGTT 1995412 29 96.6 32 ............................T GGTGAGCGTGGCTTGCCTGACCGGCTGCGTCG 1995351 29 96.6 32 ............T................ GTCATCGTCCCCGACGGACTGCTGATCCCGGA 1995290 29 96.6 32 ................T............ ACCGGGTGACGGATCCGGCCCGTGTTCATGAC 1995229 28 82.8 0 ....A................T.A.-..T | ========== ====== ====== ====== ============================= ========================================================================= ================== 18 29 97.9 35 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ATCGTCACCCTCCAGTCAGACCGAGAGGTGACCGTTCCCGCTGGCCGCAACTACGCCGAAGCGGTGACCTGGTGACAGTCATCGTCCTCACTCACTGCCCGCCCGGCCTGCGGGGATTCCTGACCCGCTGGCTCCTGGAGATCTCTCCGGGAGTCTTCATCGGAGGCCCGTCGGCGCGCATCAGGTCAGTGCTGTGGCAAGAGGTGAAGCAGTACGCGGGAAACGGGCGTGCCCTCCTGGCGTACAGCTCGGACAACGAACAGGGATTCGCGTTCGAGACGCACGACCACAAATGGCACCCGGTCGACCGTGAGGGAGTCACCTTGATCCACCGCCCCAGCGCCCCCACCGCACAGATGCCACCACCGTCCTCAGGCTGGAGCAAGGCCTCCAAACGCCGACGGTTCGGAACACGTTGAATGCATTTGAGCTCTATGTCTAAATATCAAGAAGTAGTTCGTGGCGGCCTTCACACCGACTAAAACCTCAGGTCAGGAAGT # Right flank : GGCCGGGCCCAGCCAGAGGTGCTTTCCTGGGGATGCCCGGTGCCAACGGACCTACCCTTCACACCAGCGGGGGCTGGAGTGAGTTGGTACCCGGCGGACGCTGCCGCTGCCAGAATCTCGGAGGGCTGACAGCCTGAGCTCTCGTAGCTATTGGGTGAGTCTGGTGGGCGGAAGGCAAACTTCGGTCACTTCCTCGGCCCGGTTTCGCAGGAGCGGGGCCAATTCGACGTACCAGCCACGGCCCACGGCCTGAAGCATTTCGGCGAGGGCGATCTGTTCGCCGATCCGGCCGGCGGGGGTGTCGAGGACGTGGGCGAACTCGGCACGGATGCGGTCGGCGACGGCGGGGACGCGGAGGCTGTTCACGTACAGCATTGCGGGGTCGTAGCCGACGGGGACGGCGCCCCAGCGCTCCCAGTCCAGGATGACGAGGGGGTCGTGGGTGAGGTTGGCCCACTGGAGGTCGGCGTGCCCGGTGACGCGTTCGGTGATGGCCGGGG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //