Array 1 200139-198949 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200138 29 100.0 32 ............................. CCCATGAGATGGGTCTGGTGCTTGACCGTGAG 200077 29 96.6 32 ............................A TTCCTGCAGCGCCTCAACGGACAGCCCGACCT 200016 29 100.0 32 ............................. CCAGCAGCGCCCTGAAGTCGCCCATCTGCCCC 199955 29 100.0 32 ............................. GCCTCCAGCGCTCCGCCGTCATCCTGGGCCCG 199894 29 100.0 32 ............................. GCGTCAGGCGAGGTGCGTTACACCCTGTTGCG 199833 29 100.0 32 ............................. CCTTAGGCTGGAAGGCCGACTTCACCGGCGCC 199772 29 100.0 32 ............................. CGCCTGTTCGCGCGATTGCAACGTCTTAACGA 199711 29 100.0 32 ............................. CCCGAAATGATCGGCGGTCCCCATCACCAGAA 199650 29 100.0 32 ............................. CTTCATCACGATCGCAATAGGTGATTTTCGCT 199589 29 100.0 32 ............................. ATGGCGACCCTTGAGGCCGAGGCCGTGGGGCT 199528 29 100.0 32 ............................. CCCTTGACTTGGTCATGGGGGCGATGGCGGGA 199467 29 100.0 33 ............................. CAGATCAGCGAGCAAAATCAAACGGCCTGGGGT 199405 29 100.0 32 ............................. CTCGATGACCGGCTTGCTCCCAATATTGTCGG 199344 29 100.0 32 ............................. CGATGGCTCGACCGGGTACTGCTATCGTGAGT 199283 29 100.0 32 ............................. CGCCCCCATGCGCAAATATTCCAGGGTGATCG 199222 29 100.0 32 ............................. GTCAATCTGGGCAGTCGGGCCTGGACCGATCT 199161 29 100.0 32 ............................. TAATCCACCCGGCCCTCGTCCGCCCCGGCAGC 199100 29 100.0 32 ............................. CGCGGGTCGATTCAGGCGAAACCTTGGGATTC 199039 29 100.0 32 ............................. GGCCTCCTCGGCCACGGCCCCGATATCCTGGT 198978 29 86.2 0 ...C..................GC....A | G [198952] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.1 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : CCGCCCCTTGACGCCCCCGAGGCCGTCGATCCGGTTATCCCGCCAGAGGAGCCTTCGGGTGATGATGGTCATCGTGGTTGAAAACGCCCCGCCCCGGCTGCGTGGACGCCTCGCCCTCTGGCTGGCCGAGATCAGGGCGGGGGTCTACGTCGGGGTCTATTCCCGCCGTGTCCGCGAACGCATCTGGGACGAGGTGACCCAGATGATCGACAAGGGAAGCGCCGTGATAACCTGGAGCGCCCCAACGGATTCGGGCTTCGCCTTCGAGGCCGTCGGCGAAAACCGCCGCGAACCGGTCGAAATCGACGGCCTGACCCTGGTCCGCTTCCACCCCGTCAAACAGCCGCCCGACTAACCGCGACCGCCGCCCCGGCACGACGATCGCCAAAGACAAAAAGCAGCCCGCCGAGCCGCGAAATCGCACCTAGAACAAAAACGGAACATCGGTAAGTTTTTTGACATCGTGAAAAGATATGATAATCAACGACTTCCGTTGATGA # Right flank : TGGTAACGGTTCCCCCGCATCTGGGGGAGGGGTGGCTGGATGATGCCATGATCTTCTGCCTTCTTTACTACTTCGGCTATCGTTCACCTAATTGGCAAGCGCTCTATTAAATCGACCTTGCGCTTATTAACGACTCGCGACAAACAGAAAATAAGCACTAGGTGGATTTTTCTGGGTGATTAGAGCCCAATGATTTATTCTGGTGAGATGGAGGGTCCCACATGATCAAAGGTCTGTTGCGCCAGCTTGGCGCGCAAAAATCGATTGCCGCGCAGATCGGCGTATCTGAACAAAGCGTTTCGAAGGTCGTTCGCGGAGACGCCAAGGGTGGAGGTTTACGCGTCGCTCTGGTGGTGCTGGCCGCCGCGGTGGCGGAGGTTGGCAGTGAAGCCGCCTCGCGCATCCTGGCGCGGGCGGCCGAAATGCTGAGGGCGCAGCGCCCTGACAAAGTCTGACTGTCCGAAGCGATTGAGACACATCACAACCAATACCAGTCATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214446-213870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 214445 37 100.0 37 ..................................... GCCTAAAGAGGCGCTTTTCTGCAGAACGGCTAAAGGC 214371 37 100.0 37 ..................................... AACATACGCCCCTGGAGATCATCTTCGACGCAGTCCC 214297 37 100.0 40 ..................................... GCGCTGCTCCACGGTCGGCTGATTGGCCGGCGGGGCGGGA 214220 37 100.0 53 ..................................... ACGCACTTCCGATAAAAGTCCGCCTCAACTGGATAGCCGGCCTCGGCCACCTC 214130 37 100.0 35 ..................................... CCGGACTTCTTTTCAACGATGGTTTCGGTCTTCTC 214058 37 100.0 40 ..................................... TATCAGCCATTGCGGCGCGCCTCGGCAATCTGGAGGTGGT 213981 37 100.0 38 ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 213906 37 97.3 0 .......T............................. | ========== ====== ====== ====== ===================================== ===================================================== ================== 8 37 99.7 40 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Left flank : GATCCGGCCTGTATTGGCGATCGGCGACAGCCTTTCATCCGCCCCGCCACCCCAAGCGCGGCGATGATCCCCAAGCCTTCCTAACCGCCTTGATCGCCAAGGAGTGCTTGGCCCGCGCCCTGCCCCTCCCCGCCATCAAGATCATCGCGCTGCGCCGCGGCGCCCGCGATGGTCTGGCCGCCCTGGCCCATTTGACCTTCCCCAAGCCGGTAAGCGGACCGATCCTGCTTGGCCGGGACGCCCACCGGGGGGGCGGCGTCTTCCTCCTTGGGGCGGTGCGGCGGCCCCCGGCCGAAGAGAGCCTCCCCTCGCGCGAGGGGTCCGCTGACTCAAACGACTCGCGGAGCGCTCGCAATGAGCCAATCATTTGATTTTCCCGTTCTTTTTGACACCGCCCCTCGAATGGCCGGCTTGAGGACAGCCCTTTTCAAGCCATTTTTTTCGACCCCTCGCAAATCACCCCCTATCCCCCCGCCCCCATTATGCTATTTTAGGGGGCC # Right flank : TCCCCTGACCCGCGCCGCTATCTCCGCCTTGCCGGGATTAAAGGGGGCGGACCCCTTTTTATCTCTTTGATGCCTCGGCTGATTGAAGCAGCGATGCCACCGCCGGGAAGATCGGAACTGGTTACGCCGTTAAAAGCTCTCCTTTCCGGGATTTTTGACTCATGGGGGGTTCTCTCTAAAAGCGGCGCCCCCATTTGCTTCAAGGTATCCAGATCCCTGTCTGCCTTTAGCCCCACCAGATCGGTTTTGGAGAGACGCCCCGATGGCCCCCTCCGACACACCGCCTTCCGCGGAAGATCTCCCCTCCCAGGGCGAATTGGCCCTGTTCGCCCCACCGGCGACCGCCGAGGATGCCCTGGTGCCCGCCAGCATGGTCAACGCCTGGATCTATTGTCCCCGGCTGGCTGTTTTGGAATGGGGGCGTGGCGAAAAGGCCCGCAGTGTGGATCTCATCGCCGGCCTGCGCGCCCATCAAGCCACGGAAAGCGGCCCGACTCCCG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.80,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 420499-422969 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 420499 29 96.6 32 ............................T TACTACACCGAGCCCCGCATTATCCGGGTGCG 420560 29 100.0 32 ............................. GCGCGGGCATCATCTGCCCCGCACACCATAGC 420621 29 96.6 32 ............................G TTTGGCGAATACCCCATGGTCCAAGGCGCTAT 420682 29 100.0 32 ............................. GACGCCGCGAACGTCCTGACCGAAGCCCTGGC 420743 29 100.0 32 ............................. TGGCGGCGGCGTTTCGCGCTGAAGGCGCCCTG 420804 29 100.0 32 ............................. GCCGCCGGGACCGGGGCGCAGGCGATCTACAA 420865 29 100.0 32 ............................. CTCGGCAATGCGAGGGATCACGTCGCCGGAGC 420926 29 100.0 32 ............................. CTACTACGCCCGACAGGCGATATTGGATAAGC 420987 29 100.0 32 ............................. TTAATCCCCGATCTCAGGGGGAGGCTGGAATG 421048 29 100.0 32 ............................. AACAGACGACAGCGGGATCATCCTGGCATCGA 421109 29 100.0 32 ............................. TGCGTAAGCTGCGTTCCTTGCTGGATTAGGGC 421170 29 100.0 32 ............................. AAGCCCGGGGTTTATGGAGAGCATACCATGAC 421231 29 100.0 32 ............................. CCCGGACGCCTTTTGGTGGACGACGCCGCAAA 421292 29 100.0 32 ............................. ATGACTGCATGACCGAGGCGCTTTATGCCGAG 421353 29 100.0 32 ............................. TCTAGGCCCCGGTACGCAGTGCTCACGCGTAC 421414 29 100.0 32 ............................. GACATCGACACGCCTCCGCCGACGACGGCCAC 421475 29 100.0 32 ............................. CGGGTAATCTCGCTGTGAAGGCTGACTTCACC 421536 29 100.0 32 ............................. CGGCCGAATGTTGCCCGCCCCTCCCCCTGTCC 421597 29 100.0 32 ............................. ACCACGGGGAATTCCCGATGCTCCGCCTCCTG 421658 29 100.0 32 ............................. GTGCGCGACAACATGGGGTGGGTGCGCGATCA 421719 29 100.0 32 ............................. ACGATCGGGTCTTTGCGCCAGTTCGGCGACCA 421780 29 96.6 32 ............................A TGTTCCGTCTGGCTCCAAGGTGTCGTAATCGC 421841 29 100.0 32 ............................. TTGCCGCGAATGCGGCGCCCCCCTGGCGGTCG 421902 29 100.0 32 ............................. GTGCTCTCCGCCATACCTTGGGTGGAGCAGAA 421963 29 100.0 32 ............................. GCCGTGCTCGATCGATGCGATCTCGGCAGTGA 422024 29 93.1 32 .........A...C............... TGCCGACCGCCTGAGGCGCGAGGCCGAGGTGA 422085 29 93.1 32 .........A...C............... ACCGCGCGGTCCTCCCTTCATTATCGATTTCA 422146 29 93.1 32 .........A...C............... CATGTCGCCCGCACAGCGGGAACTGGCCGCCC 422207 29 93.1 34 .........A...C............... GAGCACACCGAGGCGCTTGCCCGGGCGGCTGCGG 422270 29 93.1 32 .........A...C............... AGCCTTCTCATCTGGGCGGCAAAGCATGTTGC 422331 29 89.7 32 .........A...C..............G TGATGAATCTCCAGGATCGCCTTATTGCTCAG 422392 29 93.1 32 .........A...C............... GTGTGTGAACGGACAAAACACCGCCCTCTGCT 422453 29 93.1 32 .........A...C............... CTTCAAAAACCCGCGATTTCCGCCGCGATTGC 422514 29 93.1 32 .........A...C............... CGGCCAGGACAGCACATAAGCGGCCCCGCCGC 422575 29 93.1 32 .........A...C............... GTTGCTGTTCGTCAGGATCGCGCCGAGAAGCG 422636 29 93.1 32 .........A...C............... CCGCCCTTGTTCTGATAGGCGGACCAGATCGT 422697 29 93.1 32 .........A...C............... AGCCCCCGGAATTCCCGCTCACTTGCGGTGCC 422758 29 93.1 32 .........A...C............... GCCGTAATGCCGCAAGACCCCGGCTTGGCGCG 422819 29 100.0 32 ............................. ATCCAATCATCTGGCTCGCGGTTCGAGCCGCT 422880 29 100.0 32 ............................. TCGGCGGGAAGTTCATTTCGTGCATTGCGATT 422941 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================== ================== 41 29 97.4 32 GGTTCCCCCGCACTCGTGGGGATAGACCC # Left flank : GAGCGACTCACCCGCCAGCGGGCGGCCAAGCTGTTTCGCCAACGCGGCGTTATTCCCTCGATGATCGACAGGATCAAAACGCTTCTGGGTCTTGGGGCCGAGACCGAGGAGATCGCTTGATGCCGATGGTTGTGGTCGTTACCCGCAATGTCGAGGCGCGCTACCGGGGGTTCCTGGGCTCGGCCATGCTTGAACTGGCGCCCGGCGTCTATGCGCAGCCCCGGATGAACGCCGGCGTCCGCCAGCGGATTTGGGAGGTGCTTGCCCAATGGTATGGGCACCTGCGCCAGGGCAGCATCGTTATGACCTGGGCCGACAGCCTAGCCAATGGCGGCCTTGGCCTCGCCACCCTGGGTGAACCCCCCAAGGATATCGTTGCCCACGACGGCATCCTGCTCGTCCGCCGGGCCCTGCCGGCAATCGAAAAGAAGCCCAGTGACTGACTTTTTTCCTTCTGCTCTTTGACAGTGTGTATATTTTAGAAGGCGTTAAAGGTCAGA # Right flank : AGCATTCGGACCACTCTGATAGACAGCCAATCGAGCCGCAGGGCGTTGCCGCAAGTTATCCAGTTTTCCTTGTTCAGTGGCAGGAACTCGGCCAGCGCCAGCTTCTGTCCGCGGTACAGCACGTCCGCCTGGTATTCGGCGATGATGAGGGCGAGGCGCGCGATCTCGGCCTCGATGGCCCGCATCTCCTTGTAAGCGATGACAAGGAAATCGTTCCATCTACTCGCTGTCATTTCAGCGCCTGCCGCATCATTCGCGATAGGTCGGTCTGCAACGTGCGAAACTCACCCATCATGCGTTCCACATCAGTCGCCGGCGCGCCGTGTCCGCGCCGTTCGGCAAGCCATAATTTCAGCAAGCCGGCGACCCGGCCGAGATCGCCGTTGATACGGCCCAGCTCGGCGACGGCTTTCAAATCATAGACCGACCGAACCGGGTGATTGAGCGCCGCTGCTCGCACATAACCCGACACGCCCATGCCAGTGCTGGCGGCGCGCTGC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACTCGTGGGGATAGACCC # Alternate repeat : GGTTCCCCCACACCCGTGGGGATAGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 530220-530835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 530220 36 100.0 30 .................................... CGTGGCGGCGACCAATGCGGCATTCGAGCT 530286 36 100.0 30 .................................... GGCTGGCGCTTTCGACCGGCTACGTCATGG 530352 36 100.0 30 .................................... CGGGTAGATAGGCGCAATCGGTTCTCGGAT 530418 36 100.0 30 .................................... GGCGAGCCGTGCGCACCGGTCCTCCCCCCA 530484 36 100.0 30 .................................... CATGAAAGGAATGCCCAGATGAGCAAATCC 530550 36 100.0 30 .................................... TGATCCAGTCATCGCCCATCCCGGCCTGGG 530616 36 100.0 30 .................................... GTCACCAGGGCGATGCCGATCACCCGCACG 530682 36 94.4 83 ..........................A......C.. CCGCCCATTCCAATCCTTGACCCTCAACGCCTCAAGGCGGGTGATGCGGCTAGGAAAAATAGCGGTTTGGAAGCGGAGGCAAC T [530715] 530801 35 91.7 0 G.....T.......-..................... | ========== ====== ====== ====== ==================================== =================================================================================== ================== 9 36 98.5 37 ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Left flank : ATATCCTGATATTGAAGCAAATCGTCGTCGCGATCTGCTTCAGATCGCTCGGGATTTGCTTTGGCTCTGCCCGAGCGGATCGGGAGCCTCAAGGATGCCGGACGGGTGGCGGAAGATGGGAGTGCTGGTGTTTTATGATCTGCCGGTGGTCAGCCCGGAGCAACGGCTGGCGGCGGTGCGGTTTCACAAATTCCTGCTCGCCGATGGCTTCGAGCGCATGCACTACTCGATCTATGCCCGCTATTGCGGATCGATGGAACGCGCCGCCACCTATGAACGACGGGTGGAACAGGCCTTGCCCGCCGTCGGGCATGTCAATTTATTGAAATTGACCGATCGCCAGATGGTCGGCATGCGCAAATGGATCCGTGGCAACTACCGAGCCCCGGAAAATGCCGAGTTCGTGCCCCCAGCCCAGTATCAACTCTTCTGAACGTCCTGGCCCCTGCACGAAAAAACGCCCGAATCCTCAAGAAAATCAAGAGGATCCGGGCGGTACA # Right flank : CAACATAACAAGCATCGTCTCCGCTACCTCTTGATAATCTTAAAATAAAGGGAAAATCAAGATCTATGTCGCTTTTTTGGAAAGTCTGAGTCGGCCCAGGGCGGTGCATGAGGTTGTTCGGATTTTTTCCTTTCGGATGCCCTCGGCACTTTGAACGCAATACCCCTGGTCGCCATTCAAGTTGATGTTTGGACAAGACAGTTGTGCATAAAGAGCCGTCGCTTTTCCGGTGGCTAATCGGGCGGGCCACAGGGCGAGGCGGCCATCCACGGCCATCTTTTTCACCAGGAACAGCCTGTCCCCGCTCTCCAGGGGCCAATAGACCAGATCGCCCCGGCGCAGGCGCATCACCAAACGGGCGTTCTCCGGCGGCGGCGGCGGGGCGGGTTGGGTCCTGTCGAAGCGAGTCAGAACCCGGTGGGTCCACCGGGGCCGGCCCTTCACCTGGATTTCCCACACCTCGTAAACGGCATTGCCCATGGTGCGCACGGCGGCTTTCG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCTACCATGGCGGTGTGGGACGGGGCCATGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 989445-991910 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 989445 32 100.0 34 ................................ AGCTAAATACAATAACGATAAAAGAAATACGGAT 989511 32 100.0 32 ................................ GCGTCGATCGCGGGCGCGGGCGCCTTGGCCGG 989575 32 100.0 34 ................................ ATCCAGGGGCCAGTCGCGCGAGACCTCCCGGCGT 989641 32 100.0 34 ................................ GGGCACGACGCCGTTGATCGCCTTGGCCACCGCC 989707 32 100.0 35 ................................ CTCGATCTCCCGACGCAGGGCTGTTTGCTCCTCGG 989774 32 100.0 35 ................................ CATACCGAGTTGGCGGAGGGCTTCGGGCACCACGA 989841 32 100.0 34 ................................ TGCAAATATCCGTGGCGCTGGCCAGCGCCAAAAA 989907 32 100.0 33 ................................ GGGAGATTGAGGGGCTGCAAAAGGTCCCCCGTC 989972 32 100.0 35 ................................ TTACTGCATCAAAATGCAGACGCCCTTGGCCTGTC 990039 32 100.0 32 ................................ CTTGCCCGCCCCGCCCGCCACCACCCATGGGC 990103 32 100.0 33 ................................ GCCCGCCAGAGAGGCCTGGAGCTAACGTGGACA 990168 32 100.0 35 ................................ TCTTGGGCCTCGGTGCTATCGACGCGGTCGACGTT 990235 32 100.0 35 ................................ GTACCCTCGCCCTTAAGAAGGTGGGCAAGGTTCCC 990302 32 100.0 34 ................................ AAGGCGTGCTCGATGCCGACGCCGGCGGACAGGA 990368 32 100.0 34 ................................ CGTTCTCGGTCTACATCGACCCCGAGGCGGATAC 990434 32 100.0 34 ................................ CCACCCATCTTGGCCAAACCACGATAGCCGGCTC 990500 32 100.0 35 ................................ ATCCGGAGCCGGGTCAGCGACAATCCGTATCTGGT 990567 32 100.0 34 ................................ GAGGATGACGGCGAGGACGAATCGCCGGAAGACG 990633 32 100.0 35 ................................ CGGCCCCGCCCTCCTCCCCTCCCCGGCGCGGTGCT 990700 32 100.0 33 ................................ CATCCGCTGGATGATCGTGGCCTTCATCGGCAT 990765 32 100.0 33 ................................ ACAACGGCCACGGTGACCTATGACGCCCTCGCC 990830 32 100.0 33 ................................ TCTTTTTCCGGGGCCAAGCTACGCCAAGTCACG 990895 32 100.0 34 ................................ TGGCGCAGTTGCTCTGCCTCGACCGTCCCGGCTT 990961 32 100.0 33 ................................ GACCGCTTTTAGCGCGCCGGTATGCGACTTGGC 991026 32 100.0 33 ................................ TCGCATATCAAAGATCCCCAGGTACTCGACAGC 991091 32 100.0 33 ................................ GATCAACAAAGGCGATCGTCAAGTATGTCTCAA 991156 32 100.0 34 ................................ TCCGTCGGCCAAGACGAAATGTCGTTTCGGCGCC 991222 32 100.0 33 ................................ CACATTAGCCGGCGGTATCCAATGGATTACCTT 991287 32 100.0 34 ................................ AAGATCGATGTTTTCGACGAGATCCACGCCGCGT 991353 32 100.0 32 ................................ CTGGCCCGCGCCATGGCCGGTGGTGGCGCGAT 991417 32 100.0 34 ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991483 32 100.0 34 ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991549 32 100.0 34 ................................ TCGTCACGGGTCATCCGCCGGCTGAAGATCACGC 991615 32 100.0 34 ................................ AGATTTAGGCCAACCCGCCGGATCTGGTCCGCGA 991681 32 100.0 34 ................................ CGAGGGCTTGTCCTCATTGCACGCCGAAAGGCCC 991747 32 100.0 34 ................................ GGGTGCTCGCCGTCAAGGACGCTACGCGCCGGCT 991813 32 100.0 34 ................................ TCGACCCGCAGTATGAAATAAATAAGCGGCGCAG 991879 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 38 32 100.0 34 GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC # Left flank : TCCCGATGATGATTCTTGTGACCTATGACGTGAACACGGTGGAGCCGGGCGGGCGGCGCCGGCTGCGACAGGTCGCCAAGGCCTGCCAGGATTATGGCCAGCGCGTTCAGAACTCGGTTTTCGAGGTCGAGGTCGATCCGGCGCGCTGGGTCGCCCTGAAAGCCCGGCTGGAAGCCATCATCGATCCCGCCCTTGATAGCCTGCGCTATTATGATCTGGGAGCGAACTGGCAGCGGCGGGTCGACCATGTCGGAGCGAAACCGGCCGTCGATCTCCATGGTCCGCTGATCCTCTGACCGTCGCCGAAACGGCCGCCGCCCAGCGCGAACCCCAAGCCTGCGCCAAGTCCCCGGCAGGATCGCGCTTGCCCTAAGATATTGGGAATCAATAACAACAAAACGGGCGATGGTTTAACCTCGCCCAAAACACCCCCCTCCCGCTACCCCTTCGCGCTTCCAACCGACTTTGGTCAATTAAACCACTATGCTATCAATGCCGGA # Right flank : CAATGTGTCGCCCCGAAACTCGGGATGGGAAGGGCGTCGGATCGTGTCCCGTTGCGTGGTGTAACAGCGGTATCCCCATTTGATCTCCGGGAGGCTTGGCCGGAGTGATCTCTGGTTTACGATGTCAAATAGCGGTGGTCTGCGTCGGTGGCTGTGCCGCAGTTGCTGCTGGCAGTTCATGCGCGACAACTGGCTCTCCAACCGCGCCTTCACATCCCACGGCAACATCATCGACCACTGCTGCGAGGCATGGAATAAACTCGTCGCTCAACCATGGCGTATCATAACAATCGGAAGCGTAAATGCGCCCGTCGGTCATAATAAAAGGCTAATTTTTACTAATCGGCGATGGCCTTTTTGAGAAGTCAGGCTGCGCATTGCTTCGACAATACATTGGCTAAGCTGAGGATTCGGCGAAAGGCGGGGTTGACGTTCGTTGGCAGCCATACTGCGTGAAACAACGAGGCTATCGCGATCACGATCCGTATCTCCGCCTCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 1364501-1363926 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1364500 37 100.0 38 ..................................... CCCTTCCAGGAAAGCCTGGGCGCGAGCGCCCCGGACGT 1364425 37 100.0 41 ..................................... CCGCGAAAGTCGGGATCATCGGGGCGAAGAACAAGCTGGTC 1364347 37 100.0 39 ..................................... GGGAACCCCAGCTTAACGAGGCCGCTCTTGGCGTTGTAG 1364271 37 100.0 39 ..................................... ATCGGGGCGGTAATCCTGCGCACCCTTCGCCATGTCAAC 1364195 37 97.3 38 ......................T.............. ATCAGCAAGGAAAACTCGGTGGGGGTTTCAGTTTGCGG 1364120 37 100.0 44 ..................................... GCGGTCCCGTCCGGCCGAAGGATGGTGGCGTGCAAGGGCATATC 1364039 37 100.0 40 ..................................... GTGTTCCAGAGGCCGGAGGGTGGAGGGAGCTATCCCAATC 1363962 37 97.3 0 ..................T.................. | ========== ====== ====== ====== ===================================== ============================================ ================== 8 37 99.3 40 CTCGCACCCTATGCCCCGCCATCGAGGGGACTGAAAC # Left flank : GAAACAGCCGATGAACCGCTATGTGATCTGTTATGACATCGTCGATGACAAACGCCGGCTCAAAGTCGCCAAATGCCTTGATAGCTATGGCAGCCGGGTTCAGTTCAGCGTGTTCGAAGTGCTGGTGTCCAAGCCGCTGATGACCCGCATGGTCCGCGAACTGGGCGCGCTGATCAACGCCAAAACCGATCGCATCAGTATTTACCCCCAATGCGCGACCTGCGACGCCCGCCGCACCGATCTGGGCGCCACCGTTGAAAAGCCGGTTCACGAACCGTGGATCATCGTTTAAACTGCCCCCATTGCGTGAGTCGTAACCTCAAAAACCACCCAAAAACCCCTTAGGTTACGACTCAGGCCAACTGTTTGAAATCGTTTATAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCTTTTCGCCCCCTAAAAACACCCCGTCCGCCGAGGTTACGACAAACCACCCTGTAACCCATTGAATAATAGAGCCTTTTAGAACCGGCT # Right flank : TGGATTACTCCCGAACGGCAAGGGGATGTAAAAAAGGGGTCAGACCCCCTTTCTCTCCTTTGACCCCCTTTCTCTCCTTTCTCGCCTTTCTCTCTGGGGTGTGGAACGCCTTGCCCAGGGCGGGCCGGGAAACACTCCCCCCTTGTCAACCAAATCGGGTGGACGGCATACTGGCTGATGCTTGGCTTTGATCCCATTGATTGGATGGCGGTTCCCGGCTCGTTGGCGAACGACTTGCAACGGCGGTTGCGCGGGGTTGTGGTGTCGCCGCGCCGGCTGTCTTTGCTGACGCCGGGCGTGAACGCCACCATTCCCATGCTGCGCGGGGTCTGGGGATGCGCCCTGCATGACCGCGACCGGGAAACCTATGCCACGGTGTTCGAGGGTCTGGGGCCCGATGGCGATCCCAGTGACCGGCGGCCGCTTTATGTGTTGCGCCCAGCCCCGGCCGACCCGCGCGACGCCCCGGCCCTGGAGTGGATCAGCCTGGGCGGCGCCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCACCCTATGCCCCGCCATCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.10,-8.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 1582023-1580652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1582022 29 100.0 32 ............................. CCGCTGATTCGCAGTCGGGCAACCAAACCAAA 1581961 29 100.0 32 ............................. TCCAATCCCCCATCATGGCCTGCCCAGCGAAC 1581900 29 100.0 32 ............................. CTCGTCTCTGCTGGCTTGGTCCGCCGACGCGC 1581839 29 100.0 32 ............................. GATCATGACTGACCTCATCACGCTGCGCGACC 1581778 29 100.0 32 ............................. ATCACCTTCGTGCCGTTTGGGACAAAGGTGTA 1581717 29 100.0 32 ............................. ACGTAGTCCTTCATGGACATCTCGCCGGCGTC 1581656 29 100.0 32 ............................. TGATCGCCCTCATCCTCGCAAACTGGCGCGCA 1581595 29 100.0 32 ............................. CCATTGTGCGCCCTCTGCATCGCCAATGGGGA 1581534 29 100.0 32 ............................. CCATCGATATCAATCGCTCCGGCCCGCCACTC 1581473 29 100.0 32 ............................. GTCATCCCGATTGACCGGGCGCAGGTATTCGT 1581412 29 100.0 32 ............................. TCCCCGTTGAGCATTTGCGAGCGCAGCGGCTC 1581351 29 100.0 32 ............................. CTACAACCCGCCCCCGCCCCCGTGCCGAGCGG 1581290 29 100.0 32 ............................. TGCGACTTAACGTCCTCTCAGAGACAACGGGA 1581229 29 100.0 32 ............................. GTTCACGCAACGAAGACGGCTGAAATCGAAAT 1581168 29 100.0 32 ............................. GTCACGGCGGCGACCCAGGGGTTGGCACTCCA 1581107 29 100.0 32 ............................. CTTGGGGCGTCAATTGTGGCTCTTGTCGCCAG 1581046 29 100.0 32 ............................. ACCCAGAGACCCGCACTTTCCAAAACGGCAGC 1580985 29 100.0 32 ............................. ATCGTGCTCGCCGATATCCGCTTTAGGGATCC 1580924 29 100.0 32 ............................. GCTTGCGTGATGTGGTGTTTGCCGCTGGCGAT 1580863 29 100.0 32 ............................. TCCGCCCTGGCTGCGGCGATCGGCCTTTACAT 1580802 29 100.0 32 ............................. TTTCGGCCAGTCGCGCGTTCGTTGTGTCGAGC 1580741 29 100.0 32 ............................. CGGTTAGCCTCGACCAGGGCGGCGTCGGCGAT 1580680 29 96.6 0 ....................A........ | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CAGTCGATGTTGCGCTTCGTCGGCATCGATCCAATGCGACAAGATATCATCGTCGTTAAAAGCTCGGTCCATTTCCGCGCCGATTTCGAACCGATCGCCGAAGCCATCCTCGACTGCGCCGCCCCCGGCCCGATGCTGGCCGACCCGGCGGCCCTGCCCTTCAAACGCTTGCGCAAAGGCCTGCGCCTATCCCCCAACGGCCCGGCCTTCGGGTGAGGAAGGGGGATGAGAGGTCATGGATTTTATCCCCCCGACCGGACTGTGCATCGCCCCCCGGAGGCGCCACCCGACCTTGCGAGCCCCCTTCCCGACCTGATAAACTTGCCCTTCCGCATTCAAAGGGGGGCGATCCCAGCCCGAGGTGATCGCGACCCGGCCGATTTGCGCCAATAATAAAGACAACCGTATGCCAAGCGGCCCCCACTAAGAACAAAACAGAAACATCGGTAAGTTTTTTGACATCGTGAAAAGACATGATAATCAACGACTTCCGTCGATGA # Right flank : CGAAATTCGCAGATCCGGTCCTGGGGCTTGCCTTCATGAACTGCCCGGCGCGGGAAAGGTGGCGGACCACCTCGGTGGCCCCGTCCCTTTTTTCCCGCCCGCCCCTGTCGGCATCGCTGACCCGCAAACGTGACCTGGGGCCGGAAGGACGGCTTCACCGGCGATAGCCGGGGCGACGCCGCGATGGGAAAAAACCCCCGACGGACAGGGCCCCGCCGGGGGTAGCGCCTCGCCCTAGGAGGACCGGCCTGTGGTCTCGGCATACGAGGCGCTTTGGGCCGAGGTTAAGTCGCCAGCCCCCGACCGGCAAGCCCCTTATGTCCCAAACCCTGGATCCAACCAAACCGGTCTTGATCTCAAAAGTCTCGCCTCGTAAGATTATCGGGCGAAGCGATGGTCGCTGACGGGAGCGTTAACCATCGCCGGCAGGTCCGCCGCCCGCTCCGGTGAGACTCCCATCCCCACCCTTGCTTTCGGCGCAAGCTGAGCGGGTGGAGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 1696029-1694114 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1696028 31 100.0 32 ............................... CCAACGGGTGGGGGGAGGACGCCGAGCCGGGG 1695965 31 100.0 34 ............................... GCGGCGATTGCGGCCTCTTCTACGGGCACCCAAC 1695900 31 100.0 34 ............................... CCGAATGTAGGCGATCTGCGCAGCCACGAACGGC 1695835 31 100.0 33 ............................... CATCGGAAAACGGTCGGCGGGCAAGTCCGCCGT 1695771 31 100.0 33 ............................... TGGCGGTACCGGCGCACCCGGGCCACGTCCTGC 1695707 31 100.0 36 ............................... TGAATAAAACGCGGTTTTAGCGGCGCTCTTCTCCGA 1695640 31 100.0 33 ............................... CCGCGCTGCTCGTCAGTGAGCACAATGCCCTGT 1695576 31 100.0 35 ............................... GCTGGTCGCCGCGTAGGTTCCGTCTGGCTCCAAAG 1695510 31 100.0 33 ............................... CGACCGGGCCGGGGGCTTGGCGCAAGCCTTGGT 1695446 31 100.0 36 ............................... TGGCGAAGGTCACGGCGCTGGAAGCGCGTACCTCGG 1695379 31 100.0 34 ............................... ATGCGCGGCCTGGGCCAAAAAATGGGCGACGCGC 1695314 31 100.0 34 ............................... GTCAAAGTCCGCCTCGACCAAAGGCGCGCTCCCA 1695249 31 100.0 34 ............................... GATCTCCCCGACCTCAACATAGGTCAGAGCCGAG 1695184 31 100.0 33 ............................... CCCCATCCCCGACGAAAATGCTCGTCGTGTGGC 1695120 31 100.0 35 ............................... CTTGGCCGGCTGCGGGCGCTGCTCCCGGCTTAACG 1695054 31 100.0 33 ............................... AGCGGTCAAGCTCGGATGCTTGAAGAGGCTGTT 1694990 31 100.0 36 ............................... GGCCGCTGGCGTCTCCATGACCACAACGGCCTGCGC 1694923 31 100.0 32 ............................... CTCGGGGCACAATCATCAAACCACATGCGATT 1694860 31 96.8 36 ...............A............... TAAGAATTGCTTTTGCAAATCCTCAGAGAAAAGAAA 1694793 31 100.0 33 ............................... GCGCCAAGCCTTATCGGACTTTTCCGTTCCATC 1694729 31 100.0 34 ............................... TGCCTGCGAGAAGCCAAGCAGCTCGCGGCGTATG 1694664 31 100.0 35 ............................... CCCGCGTTTGACGGCGGCGGCGACGTCCGGGTTGG 1694598 31 100.0 34 ............................... TCAACGTCCCTGGCGCACTGACCATCCCCCGCGA 1694533 31 100.0 33 ............................... GCCCGCGTCGGCGGGCTAAATCGAGTACCCGTT 1694469 31 100.0 35 ............................... ACGGTGCGCGCGCAACAGATCGTCGACCGCCGCGC 1694403 31 100.0 33 ............................... TCTCGCTTCATCCGCCGCGCCTGCGCGAAAAGA 1694339 31 100.0 33 ............................... CCGGAGGACCGGGGCCTCGCGATCATCGCTAAA 1694275 31 100.0 36 ............................... CACTCCCCGGACCTGTCTCCGGTCTGGCCGGAGGGC 1694208 31 100.0 33 ............................... CTTTATGTGCTGATGCAGGCCGGCCTGCTGGTC 1694144 31 80.6 0 ...............ACCT.C........T. | ========== ====== ====== ====== =============================== ==================================== ================== 30 31 99.2 34 GTCGCTCCCTCACGGGGGCGTGGATTGAAAC # Left flank : GGCCGAACGCCGCCATCTGCAAACCCACGACTGGCCGGGCAATGTCCGCGAACTGGCCCATTTCGCCAAACGCGTCGCGCTGGGCTTCAGCGATGAGCCCGACCAAGCCGACCCGATCGGCCAGGACGAGCCGCTGCCCCGCCGGGTCGACGCCTTCGAAGCCGCCCAGATCCGCAAGGCCCTGGAAGCCACCCAGGGCGACGTGCAAGCCGCCTGCGAGGCCCTGGGGCTGCCCCGCAAAACCCTGTACGACAAGCTCCGCCGCCACGCCATCGACCAATCGGCCTATCGCCCGACCCCGGGGTGACAAAGTTCCCAACCGGCGCGAACCCCAAGCCTGCGCCAAGTCGCCGCCAGGATCGCGCTAACGCCATCCCCTTGATCGGCCAACATTGTTTCCACCCCCTTCCCCGCCCCTCCTCTTTTGAGGCCCTTCCTCCCCCCCTTTCGCGCCCCACCCCCACTTTCCTTAAGACAACCAGTCCCTTACACTCCGGGGA # Right flank : CTTGGCGGAGGAAACCTAAGGGGCTAAGCGGTTTCCCCTTCCCGCCCGTTATCCCGGGCGAAAGCGCCTTCCGCTTGGCCGGATTTTGCGCTACCTTATATTTGCTCACTTTGAGCATAACGCGCTTCGGCGCGGAGGACCGGTGGCTTTCGCGAGGGACCGATGACGGGATTGGAGATGCCTTTCGCCTCTGACCGTGCCGCGACGACGCTTGCCGATCTGTCGTGGTCGGCCGAGGTCGAGCGCGAGAGCGCGGCGCTTTATGAAAAGGTGGCGCGGGTGGTGCCGCCGGTTGAATGGCGGGTGTTCGCGCCGCTAATCCTGGCGATCAACGCCCTGAAGGCCGAGCGCGGCGCCGTCATCCTCGCCCATAGCTATCAAACGCCCGAGATCTACCATTGCGTCGCCGATATCGTGGGCGATTCGCTTCAGTTGGCGCGCCAAGCCGCCGAGGTCGAGGCCGATATTCTGGTGCAATGCGGCGTGCATTTCATGGCCGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 2668169-2669713 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2668169 37 100.0 38 ..................................... GCGCCGGTGAAGTTGGCGCCGGTGCAATCGGCGCTCCT 2668244 37 100.0 38 ..................................... ACGCTGGCACTATACGGTGCGTGGTCCGAGAGCTCCGA 2668319 37 100.0 38 ..................................... GTCCTCATCGAAGTCCTCATCCTCGACCGGGGCACCCC 2668394 37 100.0 38 ..................................... TCGAGGGATCCCATATCCAAAGCGCCGAACGAGTTGAA 2668469 37 100.0 36 ..................................... AAGCGTTGTCTGTCGGCAGGGCGCCGAGGACGGCAC 2668542 37 100.0 39 ..................................... AAGCACTTTCGTAAGGTTCACTGGGGTTACGGCGGCAAT 2668618 37 100.0 39 ..................................... GCTTCGATCGCACGGATCCGATCCTTCAATCCAGTCCGG 2668694 37 100.0 38 ..................................... CACATGGCGTGAACCTTGCGCGCCAGCGGATTGGCCGC 2668769 37 100.0 40 ..................................... CCGTCCTGGAAGAAGACAACCCATTGCGAGGGGGTCTCAT 2668846 37 100.0 43 ..................................... TCGAGCGGCGGGAATTGGCCCTCTTGGATGGGGGATTTTTCCA 2668926 37 100.0 35 ..................................... TTGTTCTTGTCTTCATCCGAGGGTTTGTTTGTCTT 2668998 37 94.6 38 .........C...........T............... AGGGTGGTGAGGAATTCATAGCGGCTGTGCGTGGCCTT 2669073 37 94.6 37 .........C...........T............... CAACAGAAACGGTATCAGCCATGGTAACTACTCCCAC 2669147 37 94.6 38 .........C...........T............... ATGGCTAATGAATGTATTGAACGTTTATTATCCAACAA 2669222 37 94.6 37 .........C...........T............... TCGGAGGTAACGCCATTGTCGGCGCCGTCGTCTTCGG 2669296 37 94.6 38 .........C...........T............... CTCCCAAGCCGCCACCAGGGCGGCTTTGGCGCGGGCGG 2669371 37 94.6 40 .........C...........T............... CCCGGGGGGTGTCGCGGTCTTAGTATTCCAGGATCCGCGC 2669448 37 94.6 39 .........C...........T............... GGTGTCGGCGACCATGCGCTGATCATTGCCGGTCGGAAT 2669524 37 94.6 40 .........C...........T............... GAGGGAGAGCCCACCGTACTGAAAAGCGAGGTGGCGCATC 2669601 37 94.6 39 .........C...........T............... TCGGCGGGCAACTCGAAGCAAAGGGCGCGGGTGGTGGTT 2669677 37 94.6 0 .........C...........T............... | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 97.4 38 CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Left flank : GCGGCCGGGCCATCCTCATTCCCTATGAGGTGACCTGGAAGCACGAAATGGTCGAGCTGCCAGCGGACGCGCCGAAAGCCTTCGCCACCTTGAACTCGCTCCGCGAGCTGCCGGCCTTCCTGGAAAACGGCGAGAACCGCCGCTAGCCCCCCCGATCCCCCACCCGCGCGGCGGCCGCCCAGGGAAAAGGGATTTTAAAAGGGGTCCGCCCCCTTTTCCTTCTTCTTTTTCCTTCATGTCCCGGCGTGCTCCCGGTGAAAAGCCGGTTCCCGAACCGTCGATCCTCGTTTAAACTGCCCCTACCGCGTGAGTCGTAACCTCAAAAACCACCCAAAAACCCCCTAGGTTACGACTCAAGCCAACTGTTTGAAATCGTTTAGAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCATTTCGCCCCCAAAAAACACCCCGCCCGCCGAGGTTACGACAAACCACCTTGTAACCACTTGAATAATAAAGCCTTTTAGAACCGGCT # Right flank : CTACTCTTCGCCTCCTTCGGGCTCACGGCTCGCGCCGCGACTCGCGCTAAAAAGGGGTCTGACCCCTTTTATCCTTTTTCTTTTATCCTCTTTTATCCCCTTAGGCACCGCGACCGATCAGAAAGGCGTTGCGCCGGGGCGCAACGCCTTGAGGGATCGCAAGATAATCCCCGCAGATCTTGGCGCCCGGGGGAAGCGCGGCCGGTCAGGCGCTTCGGCGCAGGCTGACCAGACCGAGGGTGGCATAGGCGAGGATGGTGGAGCCCGCCAGACCGATGCCCCAAATCAGCCCGACCAGCAACCAATCCACCGGCCCCCCGGCATCGGAGAAGCCCGATACGGTAACCCGGGCGGCCAGGACCAGGGCCAGGACGCCCCCGGCAAGGCCGATGAGTTCCGAGCGGACCAGCCGGCGGCTGTTGATCTTTCCCTCCTTGAGAAAAACGAACAAGGCGCCGCCCAGCCCAAGCAGGGCGAGGGCCAGCAGGATCCACAACACA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGCCTATGCCCCGCCACCGAGGGGACTGAAAC # Alternate repeat : CTCGCAGCCCATGCCCCGCCATCGAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.00,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 10 2716021-2716356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2716021 37 100.0 36 ..................................... AGGTGTTACAGGAGTCTCAACGACTGGGGTTGTGGG 2716094 37 100.0 36 ..................................... TTCGTATTCCCATAGATCTTACCCGTGGTCGTAAGG 2716167 37 100.0 41 ..................................... CGGACGGGCAGCTTCAGATACTTCAGGGCACTCTCGTACCC 2716245 37 100.0 38 ..................................... ACCGCGATTTCTTTCGCCTCTTCGAGCGAGGCGACGGG 2716320 37 94.6 0 .......T...............A............. | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 98.9 38 GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Left flank : GATCCGGCCTTTATTGGCGATCGGCGACAGCCTTTCATCCGCCCCGCCACCCCAAGCGCGGCGATGATCCCCAAGCCTTCCTAACCGCCTTGATCGCCAAGGAGTGCTTGGCCCGCGCCCTGCCCCTCCCCGCCATCAAGATCATCTCGCTGCGCCGCGGCGCCCGCGATGGTCTGGCCGCCCTGGCCCATTTGACCTTCCCCAAGCCGGTAAGCGGACCGATCCTGCTTGGCCGGGACGCCCACCGGGGGGGCGGTGTCTTCCTCCTTGGGGCGGTGCGGCGGCCCCTGGCCGAAGAGGGCCTCCCCTCGCGCGAGGGGTCCGCTGACTCAAACGACTCGCGGAGCGCTCGCAATGAACCAATCATTTGATTTTCCCGTTCTTTTTGACACCGCCCCTCGAATGGCCGGCTTGAGGACAGCCCTTTTCAAGCCATTTTTTTCGACCCCTCGCAAATCACCCCCTATCCCCCCGCCCCCATTATGCTATTTTAGGGGGCC # Right flank : CTCCTCTGACCCGCGCCGCTGTCTCCGCCTTGCCGAGATTAAAGGGGTTAAACCCCTTTTTATCTCTTTGATGCCTCGGCTGATTGAAGCAGCGCTGCCACAGCCGGGAAGATCGGAACTGGTTACGCCGTTAAAAGCTCTCCTTTCCGGGATTTTTTACTCATGGGGGGTTCTCTCTAAAAGCGGCGTCCCCATTTGCTTCAAGGTATCCAGATCCCTGTCTGCCTTTAACCCCACCAGATCGGTTTTGGAGAGACGCCCCGATGGCCCCCTCCGACACACCGCCTTCTGCGGAAGATCTCCCCTCCCAGGGCGAATTGGCCCTGTTCGCCCCACCGGCGACCGCCGAGGATGCCCTGGTGCCCGCCAGCATGGTCAACGCCTGGATCTATTGTCCCCGGCTGGCTGTTTTGGAATGGGGGCGTGGCGAAAAGGCCCGCAGTGTGGATCTCATCGCCGGCCTGCGCGCCCATCAAGCCACGGAAAGCGGCCCGACTCCC # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCGAGGCAGTAATGCCTCGGCCTCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.10,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 11 3524515-3525390 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077803.1 Rhodospirillum rubrum strain DSM 467 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3524515 37 100.0 43 ..................................... TCGAAATCACCTTCGTCATCCTCGACCGGGATATCCCGGACAC 3524595 37 100.0 39 ..................................... GACCACGATCAAGCGCCCCAAGATGTGCTCGCAGACCAC 3524671 37 100.0 38 ..................................... AACGCGGGGCCGTGCAGGCCGTTCGTCTCGGCGTCCAA 3524746 37 100.0 38 ..................................... TTCTATCCTTGGATTGAGTGGGGCGAGAAACCCGCCCG 3524821 37 100.0 40 ..................................... CTGTAGGAGGCATAAAACTCTTCTCGAGTCAGGGTGTCGA 3524898 37 100.0 38 ..................................... CAAGTCAACGGCGAAAGCTCGCGCAAGTGTTTGACCAA 3524973 37 100.0 39 ..................................... CTTCCTCGGGCTCCTCGGGGTCTTCGTCGAAGCCATCAA 3525049 37 100.0 39 ..................................... ATTCTTCGGGTGAGGGATCCCAGGTGCCAAGAAGCTCGA 3525125 37 100.0 39 ..................................... CCCGAACCCCAGCTTAACGCGGCCGCTCTCGGCATTGTA 3525201 37 100.0 41 ..................................... TTGTCATACCCGGACCGAGCCGCCACGATTTTACGGGTGGC 3525279 37 91.9 38 ..........A........C.C............... ATCAGACCGCGTTGGTGATCAGGAAGCCGGCGCGATTG 3525354 37 91.9 0 ..........A........C...A............. | ========== ====== ====== ====== ===================================== =========================================== ================== 12 37 98.7 39 CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Left flank : CCCGGCACCGTGCTCGCCACCGCCGACCGGGTGACCCTGGGCAGCCTGGGCGCTTTCGCCGTCGTCGCCATGGGGTTGCTGTCGTGGTGGATGGGCCGGGCCATCGCCCGCACCCCCTCGCCGCGCTAAAGCGCCGAGCAGGGAATACCGGTTTTCCGCGGTGTCGCCGCTCTCCTCTGATGACACCTCTTATACGGATACGATGCGTTCCCTGAAGTCCATCCATGCCCACCGCGCCAACCTGAGCGAACGCGTTGAAAAGCCGGTTCCCGAACCGAGGATCCTCGTTTAAACTGCCCTTATAGCGTGAGTCGTAACCTCAAAAACCGCCCAAAACCCCCTTAGGTTACGACTCAGGCCAACTGTTTGAAATCGTTGATAAAATGTGAAAACCTTCTGCTTAAGAAGGGTCTTTTCGCCCCTAAAAAATACCCCACCCGCCGAGGTTACGACAAACCACCCTGTAACCCTTTGAATAATAAGGCCGTTTAGAACCGGCT # Right flank : CCAGCCTGTGAGGCCGTCCGATACAGAGAGTCTCGATCAAAAGTTCTGCGTTAAAGGGGTTCCCTTTAACGCGGCGTGATCTACCGCCGGGGCAGGCTCTCGGCGAAGCGGGCGCTCAGCTTGGTGTAATGGCCACCGTGATAGCGGAAGGACCCCAGGAAATGCACCAGGGCGACCTCTCCGGGGGCTTGTCTGCCGAGGTACGAGATATAGCGCCCATAGGGCAGCATCAGCGCCTCGGGAAAATTGGCGATGACGAAGTTCGAGCAGACCTGCTCGCTTCCCCAGTCGCGCCATTTCGCCCCCAGCCTCGCCTCCATCAACGCCGAAAGCCGTTCGGCCAGGGCGCGCCCCGCCGTGTTGCGGGGAAATCCGGCGAACCCCGAGCAGCCCCGGCCATAGCGATGGTCGGCCAGCTCGGGGCAGTCCCCCATGGCGATCTGGGCGTGGGTTTGAACGTGGTCGGTGCGATTGGCCCGTGACAGGGCGGCGATCTCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCAGCCCTTGCCCCGCTATCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //