Array 1 122361-123398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMJ010000010.1 Eggerthella lenta strain 1001311H_170123_F12 NODE_10_length_123441_cov_53.2824, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 122361 33 100.0 35 ................................. TGGCAGTGCTCCGATATGTGGCTCAGATCATCGAC 122429 33 100.0 35 ................................. TCGTGGATCGCCTACGCGTACAGCCCGGAACAGTA 122497 33 100.0 35 ................................. CAGTTCTTCGGCGTGACGGCGCACCTCCTCAACCC 122565 33 100.0 33 ................................. TACAATGCCGAGCAGCACGCCATGCAATACGGG 122631 33 100.0 34 ................................. TGTCCCGGGACAGCGAGTACAGCGAGAAGATGGC 122698 33 100.0 33 ................................. CGGTTGATCGGCATCCCGCACGTCATGTTCGAG 122764 33 100.0 35 ................................. TGGACAAGTGCGCTATCATGTTTTCGGACGTGATC 122832 33 100.0 34 ................................. CCTGTATCGCAGTCTCGTAATCGCCGTTCGCCGC 122899 33 100.0 33 ................................. AGGCCCTTAAAGCCCGCAATTACGACCTGTTGA 122965 33 100.0 34 ................................. ACCTTGTAAAAGCCGTCGATGCGCGCGTACTCGG 123032 33 100.0 34 ................................. CGGTATCTATCTGGTATGTGGAACATGTCCATAA 123099 33 100.0 33 ................................. CACATAGTCACGCCATAATCATCGCGCGAGAGC 123165 33 100.0 34 ................................. GGATACGCTCTCATGCATGCATACCCTGTGGCCG 123232 33 100.0 35 ................................. TTGTTGTCGCCGTTCCTCGCGGCAGCCACCTCGGC 123300 33 100.0 33 ................................. CGATGCCGACCACGACGATAGCGCCCATGATGG 123366 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 16 33 100.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCGCGGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCAGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTATTGGCGCTATATGTTGATCGAGGCAGTAAATTTTGCGCATAATATTGCG # Right flank : GGGCTGACGACCCAAAGAAAAGTCAGCGCCGCGTCACTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 354-1400 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMJ010000021.1 Eggerthella lenta strain 1001311H_170123_F12 NODE_21_length_59920_cov_55.3953, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 354 33 100.0 33 ................................. TGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAA 420 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 490 33 100.0 34 ................................. GAGGACGGTGTGGATCCATTACGACATCACCGGG 557 33 100.0 34 ................................. ATGCGCAAAGCCAACTCGGTCTGTCGCCAGACGA 624 33 100.0 33 ................................. CAGCTGTTTCCGTTGACTCGAAGCAAGCCTGAC 690 33 100.0 33 ................................. TGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAA 756 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 826 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 895 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 961 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 1027 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 1098 33 97.0 33 ..T.............................. CTACGATGCCATGGCGTCCTATGCATTCACGGG 1164 33 97.0 34 ......T.......................... GAGGAATATACGCGATTCGTTGAAACGGATGTAG 1231 33 90.9 36 A.....T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 1300 32 93.9 34 ..............-.................C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 1366 33 75.8 0 .....GTT.A..T.....C.C..........G. | T,C [1370,1382] ========== ====== ====== ====== ================================= ====================================== ================== 16 33 97.0 35 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TTGAAATTTGCCGACGTGCTGGACGGCTACAACCGCACCCACGAGTCACTCCCCGCATGGGGAGTGCGGGTTGAAATAGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTGGTCACTCCCCGCATGGGGAGTGCGGGTTGAAATTAAACGAACTTGAACAGACGCATTTTGATAACCGTCACTCCCCGCATGGGGAGTGCGGGTTGAAATTGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAAGTCACTCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCG # Right flank : TCGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCACTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTCCATAAGATGGAGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTAGTGCTCGTCGGACGCCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCAACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATTGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTCACAGCGTCGAGCGAGTCCATCAATCCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1147-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNMJ010000040.1 Eggerthella lenta strain 1001311H_170123_F12 NODE_41_length_1190_cov_19.5876, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1146 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 1080 33 100.0 32 ................................. GAGTTCGTTACCGACACGACCGGCCTCATCGG 1015 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 948 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 881 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 814 33 100.0 36 ................................. ACGTATACGGGCTTCGCGCCGGTGCCGTTGACGTCC 745 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 679 33 100.0 33 ................................. GATCCGCTACGACAACGTAGGGGATCAGGCCGA 613 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 544 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 477 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 411 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 343 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 276 33 100.0 34 ................................. AGGCCCTGTCGGCCCGGTCGGCCCTGTCGGCCCC 209 33 100.0 34 ................................. ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 142 33 100.0 33 ................................. ATGCTACTATACGATTTTTTTGTTCCGAAATTG 76 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 100.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : TTGAAATTTGCCGACGTGCTGGACGGCTACAACCGCACCCACG # Right flank : TGGGCTGACGACCCAAAGAAAAGTCAGCGCCGCGTCACTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //