Array 1 407-613 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYP01000318.1 Xanthomonas fragariae strain ICMP 20575 isolate ICMP 20575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 407 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 467 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 527 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 586 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : ATAMGAGACAGCCCTGAATTCCCCACAGTGGGCTTGCATGAAGGCGTACTTTGCCCTTACCCCTTGGCAAAGTACGCGGCGGCCTTTTTTAGGATGTCGCGCTCCTCGGTCACTCGACGCAACTCTGCCTTCAGCCGCCGAACCTCGGCGCTCTGGTCCACCTCGGCGCGCTGCACCACGCCAGGCTTGCCGAACTTGCGCAGCCAGGCGTAGAGGCTGTGCGTGGTGAGACCCAGTCGCTCCGCGACTTCTGCCACCTTGAAACCACGATTGGTCACTTGCCGGACCGCCTCGATCTTGAATTCATCCGTATACCGCTTGCTGCTCATGGACACCTCCGAATTGACCATTTTCCATGGCCTTGAGATGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTAGG # Right flank : ATGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2428-299 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORYP01000396.1 Xanthomonas fragariae strain ICMP 20575 isolate ICMP 20575, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2427 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 2367 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 2306 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 2246 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 2186 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 2126 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 2066 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 2006 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 1946 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 1886 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 1826 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 1766 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 1706 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 1646 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 1586 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 1526 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 1466 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 1406 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 1346 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 1286 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 1226 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 1166 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 1106 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 1046 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 986 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 926 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 866 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 806 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 746 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 686 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 626 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 566 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 506 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 446 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 386 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 326 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGGCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //