Array 1 611-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000236.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 610 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 549 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 488 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 427 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 366 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 305 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 244 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 183 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 122 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 61 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12653-14269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000012.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12653 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 12714 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 12776 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 12837 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 12898 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 12959 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 13020 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 13081 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 13142 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 13203 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 13264 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 13325 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 13386 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 13447 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 13508 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 13569 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 13630 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 13691 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 13752 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 13813 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 13874 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 13935 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 13996 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 14057 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 14118 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 14179 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 14240 29 93.1 0 A...........T................ | A [14266] ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1090-145 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000465.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1089 29 96.6 32 ..M.......................... GTCTATAACCGTCGCCTCACGACTCGGCATGT 1028 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 967 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 906 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 845 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 784 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 723 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 662 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 601 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 540 29 96.6 32 .............R............... CGTGACTACTGCAACTTAAATCACGACGAAAT 479 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 418 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 357 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 296 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 235 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 174 29 93.1 0 A...........T................ | A [147] ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGC # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACYGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 105156-105793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000273.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105156 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 105217 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 105278 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 105339 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 105400 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 105461 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 105522 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 105583 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 105644 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 105705 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 105766 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000635.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 10 34.5 32 -------------------.......... GGGTAAAAAACTATACGATCCGCGCTTAGGGG 43 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 104 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 165 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 226 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 86.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : CGCCCGGAATCAGCGCCGTCTATTGAGGG # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.18, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000696.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 36 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 98 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 159 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 220 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 281 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 342 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 403 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCGAATATATATGATATCGAATAACGAAGCAAAG # Right flank : GGGTAAAAAACTATACGATCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 283-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000701.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 282 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 221 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 160 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 99 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 38 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGAT # Right flank : GCGTGACTAC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 507-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWXX010000709.1 Salmonella enterica subsp. enterica serovar Derby isolate ER1175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 506 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 445 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 384 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 323 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 262 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 201 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 140 29 100.0 34 ............................. CCAGATTGAGCGCCGAACTAACCAGCGCATGATC 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGGTTGGCAGCATGATCGCTAAATCTAAAATGC # Right flank : GGTTGGCAGCATGATCGCTAAATCTAAAATGCCGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //