Array 1 11850-14574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHZ01000105.1 Streptomyces sp. NRRL F-5193 contig105.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================== ================== 11850 29 82.8 32 .C.........T.G.A.......A..... ACGGGCGACGGGACGTTCTTCCACGCCCACAT 11911 29 86.2 32 ...........T.G......C....G... TGGGGGGTATGCGACCGCCACACCGCGCCGGC 11972 29 89.7 32 ...........T.G...........C... GCGCGCGCCCTCGAATGGGCGTCGAAGGGACG 12033 29 100.0 32 ............................. GACCGCAACCCGGACACCCTCGCCGAGTTCCC 12094 29 93.1 32 ..........T.....T............ CCGCGCCGCCGGTAGTCCCTCGCCCTCGGGGT 12155 29 93.1 32 ...........A.....A........... AGGGTGGTGGGCTCGACGTGCGGGCAGCGGTG C [12164] 12217 29 86.2 32 ........T..T............AT... TGCTACGCCGAGACCATCGCCGAACGCATCCG 12278 29 89.7 32 ..........TC.A............... CAGGCCCCGGGCCGGATGACGGTCACCCCGCT 12339 29 96.6 32 .................A........... GCCTACGACTTCGACGCCCACTGCGTGCGCGT 12400 29 93.1 32 .............T...........C... CTGCGGGACCTCCGGCCCGGCGCTGACGGGTT 12461 29 93.1 32 ...........A.A............... GCGACCCAGCCGCCCGCGATGGGCACCACGCA 12522 29 93.1 32 G...............T............ GAGACCCCGGACGAGTACCAGGACGGCCAGGA 12583 29 96.6 32 ........T.................... GTCAACGAGACCACCGTGAAGCAGCTCGGAAG 12644 29 79.3 32 ..A.....T..T.G......A....G... CCGATCGCCTCGACGAGGGCCTCGGTGAGCGC 12705 29 89.7 32 ...........T.G.C............. CCGCCGGCGAGCGGCACGGCCGCATGGATCGA 12766 29 96.6 32 .................A........... TGGGACCAGGCCGTGAAGGTCTGAGAGGGATG 12827 29 79.3 32 T..T.......T.GT..........C... AACGAGTGAGCGAGTTCTTCATCATCACCGCG 12888 29 93.1 32 ...........A.A............... GCCAGCAAGAGCACTGCCGAGACACCCGCCGA 12949 29 93.1 32 ..............T.......G...... TTCCTGATCGTTGACCGGGTCGGCATGTCCGT 13010 29 93.1 32 ...........C.G............... CTGGCCGTCAGGGCCGGTGTCTCCCTCGGCAG 13071 29 93.1 29 .........A...............T... GGCCCTGGCCATGTGCCGGGGCCCGTCGT 13129 29 82.8 32 ...T.T........T...T......T... CGGCAGCCGTCCGACGCCGCGATCCAGGGATG 13190 27 86.2 32 ............T--..........C... GAGCTCGGCCTCAACTGGATCTGCTGGGCGTG 13249 29 86.2 31 ..C....T....T............T... AAGAGGACCAGGACATCACCGGCTCGCAGTT 13309 29 89.7 32 .....G...........A.......G... GCTGCGGTCACTGCAAGGGGAGGGGGCTGCCC 13370 29 96.6 31 .........................G... ATCACGGAAACCTCGTCCTTGCGCGGCTCAT 13430 28 93.1 33 ..............G........-..... CCGCCCGTTCTTCCGGTACTGCCGCGGGACGCC 13491 29 79.3 32 ..........TCTG..G........C... GTGGCGCACATGCGCAGTCTCATGGAGCGCTA T [13507] 13553 29 75.9 32 ...T.T.....T..G.T....G...C... AAGGCCGGCTGGCGGGTTTACAACGCCTGGCT 13614 29 93.1 32 .............T...........C... ATCGTGACGGAGGACCGCGCCGGCGCGATGAC 13675 29 86.2 31 ...T....T...T.T.............. CACCCGGGAGCGGCTTGTTCTCCCGGTAGGG T [13702] 13736 29 79.3 32 .....T.....C..T......G...T..T TTGCTGTCGATGAGGAGGTCGCCAGCGGCCAG 13797 29 79.3 31 G.....T.T........A.......T..G CCGCGAGGTTGTCGTTGGCGCCCGCCAGCAC 13857 29 100.0 32 ............................. CTCTTCCTGACCGACCTGGCGCGCCGCAACGG 13918 29 86.2 33 ....C.....T..............G.T. TTCTTCTCACAGCCGCATCGCGGCCGCGGTGAC C [13941] 13981 28 75.9 32 T....TT.T...-...T........T... CAAGATGGGGCGCCGCCGGAAGCCCGACGAAA 14041 29 75.9 110 ...........C.G.......G..TT.GG GTCTCGGTCGCTTGAGTCGCTGTTCCGGGCTGACGGGGGGTGGTTTGTCTGTTTCGGTGAAAGTTGCTTGGGGGGCGGTTGCCGTCGGGTAGAACTGCAGGTCAGGCAGT 14180 29 96.6 32 .........................T... CCCACCTTCCCGGCTACGTTCCGTGGAAGTCG 14241 29 93.1 33 .........A...............T... GGACCGTCCGCCTTGAAGGCGGTGGTGCGGGTC 14303 29 89.7 32 ................GA.......C... ATGCCGCGGACGTAGCGGGCCACGCGGTTGGG 14364 29 69.0 32 ...T....T.TT.GT.T........TT.. GGCGCCGGCGGGATCCTCTTCGCGTACAACAC 14425 29 82.8 32 ......T......GT.T........C... GAGGTGCCCGTATCGGTCCAGGATGCTGTCAA 14486 28 79.3 32 .....-.....T.GT..A.......G... AACAGCGCCTCGGCCGTCGCCCCCTGGACCCG 14546 29 86.2 0 ...T....T....T.............T. | ========== ====== ====== ====== ============================= ============================================================================================================== ================== 44 29 88.0 34 CTGCTCCCCGCGCCCGCGGGGATGGACCC # Left flank : GAACGTGGGGAACAGGCCCGTTCGACAGCGACCTCGCCGCAGACTTCGTCGATCAACTTGTGGGACTCACCCACCAGCAGACTATCTACGTGCTGGAGCGGGCATTCTCCCGAGTCACCGACTCGGGAGAATGCATCGATGGCGGAGACGGAGCCGAAGCCGTTGCCGCCGGCGCTCTCGTCGCCAGCACCCTTCCGGACAGCCCCATCGTGATTGACCCCGATGACGGCCCCAGGCAACCACTGCCCGAACTGCCGGCCTCACTTCGTACGTCGGCGATACTCGCTCTGGGCCGGGTTCTCCAGGACGGATCAGAGATGGCAACCGGCTGGGTGGACGCTGCCGACGCCGATCGGTGGCGCCAGGAAGTGCGACAGGTCCTCCAAGCACTCGAAACACCCGCTGATCACTAATCGTGACCGCTTCACGGAAGCCGTGCCAGAACCCGTTCTCGTGGACAAAGCCAGCCCCTCACGGACCATGGCACGCGCAGACCCCGC # Right flank : CGGCTCTGTTGCCGGCTCGTTCTGGAGCTGGCGCTGCTTCCCGCGCGGGGGTGGTGCTGGGGGAGTGGGTGATGTGTTTTCTGCATAGCACCGGGGTTCTGTATGCGGTATGCGTAAATCGCATGCGGGACGTGTGGTGTCGGCTGGTGTTCCTGCTGGCGTGGTGTGCAGCTTCTGCTGCTTTCTGCCCCGGGGCGCGTGGTTGGGGAGAGTGCCCTCGCCTGGCGGGCGAGGGCCTGGGCCGTCGCTGCGTCTTTCCGGGTGCCCTCTTGCCCGTTTGTGCTGGCCTTGCCCGGGCGCCCGCTGCCTGCCGGTCTTGTGGTGTCTGTGGGGGTCCTGGTGGTGCCGGGAGCCGGGGGTGTCCTGAGTCTGGGGGCCGTGTGGTGAGTGTGGGGTGCTGGGTGCCTCTCAGGCTGTTTTCCCTGGTGGTGGGGTGTGCTGAGAGCCGTGATTGGGTGTCGTGTGTGGCTTTCGTACGGCACTGGTCGGGCCGCGGGGGT # Questionable array : NO Score: 4.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGATGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [45-75] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15198-15529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHZ01000105.1 Streptomyces sp. NRRL F-5193 contig105.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 15198 30 86.7 31 ...T...T....T................A TCGAGGACCTCGAAGCGAAGCTGGTGTCCGC 15259 30 100.0 31 .............................. GGATCAAGGCCATGGGCGGCTGGATCAAGTC 15320 30 93.3 31 ............T................T ACGACTGGTTCGCCGCGCGGCGGGACGACGT 15381 30 93.3 31 ..............T..............C CCAGCACCCGAACCGAGGTGACCCATGACTG 15442 28 86.7 30 ...........--..............T.T CTTCCCCAGGTCTTCGGCGACATGGTGGCG 15500 30 83.3 0 ...T.T.....G.T..............T. | ========== ====== ====== ====== ============================== =============================== ================== 6 30 90.5 31 CTGCTCCCCGCTCGCGCGGGGATGGACCCG # Left flank : GCGGGACGTGTGGTGTCGGCTGGTGTTCCTGCTGGCGTGGTGTGCAGCTTCTGCTGCTTTCTGCCCCGGGGCGCGTGGTTGGGGAGAGTGCCCTCGCCTGGCGGGCGAGGGCCTGGGCCGTCGCTGCGTCTTTCCGGGTGCCCTCTTGCCCGTTTGTGCTGGCCTTGCCCGGGCGCCCGCTGCCTGCCGGTCTTGTGGTGTCTGTGGGGGTCCTGGTGGTGCCGGGAGCCGGGGGTGTCCTGAGTCTGGGGGCCGTGTGGTGAGTGTGGGGTGCTGGGTGCCTCTCAGGCTGTTTTCCCTGGTGGTGGGGTGTGCTGAGAGCCGTGATTGGGTGTCGTGTGTGGCTTTCGTACGGCACTGGTCGGGCCGCGGGGGTTCTTGTCCGGCCGGGGTCTGTGTGGCGGGCAGGTCTCCATCCAGCCCGGCGCCCCGTTCCCCGCGGCTGCGCCCTGGGATGTGTGGGGATGGTTGCGGGACTGGCCGGCCCGGACCCTGACGAT # Right flank : CCAGCGTGACGCAGGGGGCGGCGATGACCAGCTGCTTCCCGTGCCTGCGGGGGTGGGGGTGTGGGTGATGTGTTTTCCGCATGGTGCTGGGGTTCTGTATGTCGTATGCGGAAGTCGCATGCGGGGTGGGGGTGGGTTGTGTTCCTGTCGGCGCGGTGTGCTGCTCCTATTCCTGCTGTCTGTCTTTGATCGCGCGGGGCTGGGGGCGGTGTCCGGTGAAGGGCCTGGATCCGTCGCTGCGCCCTCTCGGGGGGCCTCTGCGTGTTGCTGGTGCCGGTCTGTTGTCTGTGGGGGTCTGGCGCGGAGGGCCGGGGGTGTTCTGTGCTGGGTGGTGTTGTGGTGAGTGTGGGTGATGGTCTGCATGAGGTTGTCAGCAGAGATTCGTCATCTGGATGTCAGCGGTATAGCCAGAGTGACCTGCTAGTTCTCACTGTCGGGTGGTGACGAA # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCTCGCGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1086-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHZ01000092.1 Streptomyces sp. NRRL F-5193 contig92.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================== ================== 1085 29 100.0 32 ............................. CCCGCCCTTCTGAACCCGGAAATCAAGGGACA 1024 29 100.0 32 ............................. GGTCCCGATCTGCCGGGCCTCCTGCGGGCCCT 963 29 93.1 32 ...........T....T............ GCGATCAACCCCAAGGACTGGCTCGACCCGGT 902 29 93.1 32 ........T.....T.............. AACGGCATCCGCAAGGTCTGGAACCTGGTCAC 841 29 82.8 32 ..........TA..T....A...C..... TCGCCCGCCGCGATCTGCCCCGCGAGGGGAAG 780 29 93.1 32 ..........TA................. AACAGCGACGAAGTGCCGGCCTACCGGCACAC 719 28 89.7 33 ...........A....T........-... TATTCCGGCGATTCTGTCGCCTTGTGAGGCTGT 658 29 82.8 32 ..TG.......G.T...........T... TACCGGATGCCCGAGGACGGCACCTCGCGCGC 597 29 79.3 9 .................T..C.A.CC.G. CCGTGCCGG Deletion [560] 559 29 89.7 32 .C...T.......C............... GGCATGGGCTACAAGGGAATCGTTCAGTTCGG T [544] 497 29 89.7 79 ...........A.A..T............ GAGGCTGCCAACATCCTGAACACCCGGTTCCTCTCCTCCCTGCCCCCTACGGCGCCGGCCCTCAGAAGGTCGCCGACAT 389 29 82.8 32 ...T......TA.A...........T... CAGGTCAAGGGAGGCCGGTCGGAGAAGCCGGA G [368] 327 29 82.8 32 ........T.TA.T...........C... CTGGTCGGTAACGACGGCATCGTTCAGGATCG 266 29 82.8 32 ..........TG.C...A.......C... GACATCACCGTGGTCTGGTCGACGCCGGGCGG 205 29 75.9 32 ..A........G.A.A...A....TT... ACGGTGCTGACGCTGATCGCGGTCGGCGTGAA 144 29 82.8 0 .....T....TT..T..........G... | ========== ====== ====== ====== ============================= =============================================================================== ================== 16 29 87.5 34 CTGCTCCCCGCCCGCGCGGGGATGGACCC # Left flank : GCGCGGGGATGGACCCTCGAACAAGATCGTCAGCGTGTACGGCATCGGCTGCTCCCCGTACGCGCGGGGATGTCCCCAACGGCGCGGGGGGTTGGACCGCAGGTTTCTACTGCTTCCCGCGCACGCAGGGATGGCCCCCACAGCGGGCCGAATTGCGGGCGGGTCAGGAACTGCTCCCCGCGCCTGCGGGACTCACCTTCGGGTGTGGGTGCTGAAGCCGGGTTTGGTGGTGGTGCTGTGTCGGTTCTTCGGTCGCTTGGGTCGCTGTTGTCGGTGGTCGTGGTGAGCGGGGGAGCGGGCATTGTGGTCGCTCGTCACTGAGTTCACCGTGCTCGGGGGTGCTCACCACCGGACTCACCATGTCCGGGGTTACTCACCAAGGGGCTCACCACCGAACTCACCACGGATGGTTCTCTGGACCCCCGGGGAGTGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGAAGCGGGCCGGTGTCGGGTAGAACTGCAGCTCAGGAAGA # Right flank : CGGGCGTTCCTGGAACAGTGATGGTCTGCATGAGGTTGTCAGCAGAGATTCGTCATCTGGATGTCAGCGGTATAGCCAGAGTGACCTGCTAGTTCTCACTGTCGGGTGGTGACGAA # Questionable array : NO Score: 4.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.38, 5:0, 6:0.25, 7:-0.35, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5912-1387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOHZ01000092.1 Streptomyces sp. NRRL F-5193 contig92.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================ ================== 5911 29 82.8 33 .....T..T.....T..........TT.. AGGCTCGACAGGACGACGGTGGCGACGTCGTCC 5849 29 89.7 66 ...........C.G...........T... TGCCGGATGCCCGAGGACGGCACCTCGCGCGCCTGCCGCCCGCGCCGGCGAGCCCGCCCGGGCCGG 5754 29 82.8 32 .....T.....A..T..........A..T GGCATGGGCTACAAGGGAATCGTTCAGTTCGG 5693 29 93.1 32 ..A......................A... ATATACGTCGCCCCGGTCACGGGCGCGAACGC 5632 29 89.7 32 ...........A.....A.......G... CCGACCCCCACGTAATCGGCGTCGTCGCCCAC 5571 29 86.2 32 .........A.C.G...........A... ACAACGGGGTATTACACACTCAGCCGTGCCGT 5510 29 89.7 33 ...........T.G...........G... TGCGGGACTTGACGTGATCTTCACGGCCCGGCT 5449 29 89.7 31 T.........T..T............... GCGAAGACGTTCTCGCCGTCCACGAAGACCG 5388 29 72.4 32 .GA.....T..CTG.........A.G... GCCGACCCGTGCAGGCAGACGGTGAAGTTGTA 5327 29 79.3 32 .C.........CTG.......G......T CACGCCGCCCTCGCCCGGGGTGAAGTCGACCT 5266 29 82.8 32 ........T..C.GT.G............ GACCTCATCTCCCTCGCCGGCGACCCCGACGG 5205 29 86.2 32 ........T..C.............A..T GTCAGGAACAGCCCGGGCAGACCGAGCTGGTC TCCC [5187] 5140 29 86.2 33 .....A........T.T........A... CAATCAAGGAATGGCGGCGTACCCTTCCCCTTC 5078 29 96.6 31 T............................ GCTGGGACGAGGAGCCGCAGCAGTTCACGCC 5018 28 75.9 32 .....-.....T.TT...A.....AA... TCGGTCACTCCCTCGAACACGCCAACCAGCTC 4958 28 86.2 63 ...........-.T..........TA... ATCAAGAACTTCCAGGCCAACGTGAACGCCGACCTCGCGCGCCTGCGTGCCCGGATGGAGTCG 4867 29 82.8 32 ...T......T..G..T........T... GCCGGTCTGACCGTGAACGGCTGGCTGAACGC 4806 29 86.2 31 .....T....T.............AA... GGGGCCTTCCACCTCGACAGCGCCTGGCACC 4746 29 96.6 30 ............................A TCCGAGCCACTACACCTGGCTCCCGAATGG 4685 29 89.7 181 .......T.............G....T.. CTGGGGGGTAGTGCCGCCGGGCCGCCCTTTTTCTGCTTCCTGTCCGCGCGGGGGTGTTGGGGTCTCGGTCGCTTGGGTCGCTGTTTGGTGCCAGCGGGGGAGGGGGGTGGGTGGTTTGTTTGTTTCAGTGAAAGTTGCTTGGGGGCGTGTTGGTGTCGGGTAGAACTGCAGGTCAGGAAGA 4475 29 89.7 32 G..........C.............A... CGCGGCCGGGACGGGGGGAGCGGCCCAGTCGG 4414 28 86.2 32 G.....T....-.............A... ACCGGCCGCGCGCCGGCCACGTTCGTGCACGA 4354 29 89.7 32 G..........C.............A... GTTTCATGCCCGTCAGGGTGAAGCTGACCAAA 4293 29 86.2 32 G.......T..C.............A... ACGGCGTTGCGGCAGGCGGACACCCACGCAGC 4232 29 93.1 31 G...........................G AGACCCCGGACGAGTACCAGGACGGCCAGGA 4171 29 89.7 31 ........T.....T............G. ACGGCGGCCGCACGTTCATGGCCGACCAGGG 4110 29 86.2 29 .......T...T............AA... CGGCACTACCGGGCGCCCACGCTGCTGTG 4052 29 79.3 31 ...T.T....TT.A..............G TCAACGAGACCACCGTGAAGCAGCTCGGAAG CG [4046] 3989 29 79.3 32 ..A.....T..T.G......A....A... TGGGACCAGGCCGTGAAGGTCTGAGAGAGATG 3928 29 82.8 32 ...T.......T.GT..........T... ACGTGGCTCGTCCCGCGCTCGTCCGTCGGCTC 3867 29 89.7 32 ..........TA.A............... CTGCAGTGGGTCATGGACGCTCTGCCCGGCTG 3806 29 75.9 32 ...T......TT.G...........GT.T GTCCCTTGCGGGTGCCGGGGCCGGGACACGGC 3745 29 79.3 224 ...T.....AT.T.T..........G... TCTGTGGGTGTTGTGGTCGGTGGGTGTGGTGAGTGGGGGAGCGGGCATTGTGGTCGCTCGTCACCGAGTTCACCATGCTTGTGGGTACTCACCACCGAACTCACCATGCCCGGGGTTGCTCACCACAGTGCTCACCATGGGCGGCCCCTGAGGGCGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGGAGCGTGCTGGCGTCGGGTAGAACTGCAGGTCAGGAAGA 3493 29 100.0 32 ............................. CACCGAGGTGCTGATCCGGATGGTGCGCCGGC 3432 29 100.0 32 ............................. TTGCCGGCGAGGTCGACCGAGCCGGGCACCAC 3371 29 82.8 32 ...........ATG.........A.A... GAACCGGCCGGCGACACCCTTTACGGTCCCGT 3310 28 86.2 32 .....-.....A.G...........G... AACGCGGACCGCGGGGAGTGGAACTTCTGGGA 3250 29 93.1 31 ..............T.............G TCGAGTTCGGCCTGGACGCCGCCACCGGCCG 3189 29 79.3 32 T.......T..C.GT..........T... GCCTCGCAGAACTGCCAGTTTCGGGGCATCGA 3128 29 82.8 32 ..........T.TAT..........A... GACCGGTTGGCCACCGCCATCAAGCGCAAGGA 3067 29 89.7 32 G..........A.............A... GAGGCCACCTTCCAGATGCAGCAGCTCCTTAC 3006 29 86.2 32 ......T.......T.........AT... GCCTACCTCGACAACCTGTCCGAGGACCATGC 2945 29 86.2 32 ...T.T...............G...A... GGTCCTAGGATGATCCGCTGCCAGGTCCAGAG 2884 29 86.2 32 ...........TGG...........A... TCGCGGACTCCTGGATCCCCGCATGGGTGACC 2823 29 86.2 32 ..........GA.G...........T... GAGGGAACGGCCGCACAGGACGCCTCCACGCT 2762 29 82.8 31 ..........TA.G..........AA... CCGCCGACCAGCGGGCGCGGCAGGCTCGGGC 2702 29 89.7 32 ...........C.G...........A... TTGATCGACTCGTTGTAGGTCGGGGCGATCTC 2641 29 89.7 33 .....G...................AA.. GCGCCGATCAGCGCGCCCCCCCACCAGGCCAAG 2579 29 82.8 32 .....TT.....T.T..........A... CCGCCCTTGCCGCGGGTCTCGATGAGGCCGCG 2518 29 79.3 32 .............TG.A........AT.T GGCCGGCCGTCGTCCTGTGCCAGCAGGCTGAA 2457 29 79.3 28 .C....T.T.T...T..........T... TCCGCACCGTGACCGCCCGACTCCAGCA 2400 29 82.8 33 ...T..T....C.G...........G... TGCGGGACTTGACGTGATCCTCACGGCTCGGCT 2339 29 89.7 32 .....T........T..........A... GCTCAGTACAGCGACGCCGTCCGGGCGTGGCT 2278 29 86.2 32 .....T..T........A.......T... TCATCGCCGCCGTCGGCCGTAACGTCGACGCC 2217 29 93.1 33 .............T...........G... GCTGCAGTACGTCATGGACGCTCTGCCCGGCTG 2156 29 89.7 32 T..........T.G............... ACCGTGGAGGACGAGCGATGACCCAGCCCAGC 2095 29 89.7 29 ...........T.G...A........... GTGGCGCACATGCGCAGTCTCATGGAGCG 2037 29 79.3 32 ..A...TT.A...T..T............ AAGGCCGGCTGGCGGGTCTACAACGCCTGGCC GC [2021] 1974 29 93.1 31 .............T..............A TCGCGACGGAGGACCGCGCCGGCGCGATGTC 1913 29 82.8 31 ...T....T...T.T..........A... CACCCGGGAGCGGCTTGCCCTCCCGGTAGGG 1853 29 79.3 32 .....T.....C..T......G...T..T TTGCTGTCGATAAGGAGGTCGCCAGCGGCCAG 1792 29 82.8 32 G.....T.T........A.......T... GCCGCGAGGATGTCGTTGGCGCCCGCCAGCAC 1731 29 86.2 32 ...........A.A....A......A... GAGGGCCTGGAGACGGCGCTGGGTCCCAGTGC 1670 29 86.2 43 ..........TA.G...........T... GCGTACCGGCCGGGCGGCTACCTCTCCAAGCTCTGCTCCCCGT 1598 29 93.1 32 .............G...........A... TCGAACAAGATCGTCAGCGTGTACGGCATCGG 1537 29 86.2 32 ..........TA.G..........T.... AACGGCGCGGGGGGTTGGACCGCAGGTTTCTA 1476 29 89.7 32 .....T.......A...A........... CACAGCGGGCCGAATTGCGGGCGGGTCAGGAA 1415 29 75.9 0 ..............T.....AC.CA..TT | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================================================ ================== 68 29 86.2 38 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : GTCGGTGACCTGGGACATCTCGCTGAAGACTTCATCGATCATCTGCAGCGAGGGCAACACCTCACGACTGAGCTGGCCCTCATCGGCCAGTCGCGCAGCGAGGCGGAAGGCATCATCGAAGCCCAAGGCGATCTCGTCCGGCGGTACGTCGTATGTGTCCAGCCAGGCCACCTGATCCGAAGCAGGCGCCGCAACCACGACGACTGCCTCGATCAGCATGCGACGACGCGCTGAAAGACCAGGGCTCTCCACAAGGCCATCGTGCCACGACTCCGGTCGAGCCGAGCGAACAGCCCCTCATCTCTCTGAGCACGTTTGCCCGTACTTCACTGAGCACATTCTTGAGTACGCCGACAGGTGAGTGCGGGGGAGGTTCAGTGTGGTCGTTCGCCACCGAGCTCGCCATGCTCGGGGGTATTCACCACCGGAGGTGTTTTGTCTGTTTCGGTGAAGTTGCTTGAGAGCGGGCCGGCGTCGGGTGGAACTGCAGGTCAGGAAAA # Right flank : CGGGTGTGGGTGCTGAAGCCGGGTTTGGTGGTGGTGCTGTGTCGGTTCTTCGGTCGCTTGGGTCGCTGTTGTCGGTGGTCGTGGTGAGCGGGGGAGCGGGCATTGTGGTCGCTCGTCACTGAGTTCACCGTGCTCGGGGGTGCTCACCACCGGACTCACCATGTCCGGGGTTACTCACCAAGGGGCTCACCACCGAACTCACCACGGATGGTTCTCTGGACCCCCGGGGAGTGTTTTGTCTGTTTCGGTGAAAGTTGCTTGGAAGCGGGCCGGTGTCGGGTAGAACTGCAGCTCAGGAAGACTGCTCCCCGCCCGCGCGGGGATGGACCCCCCGCCCTTCTGAACCCGGAAATCAAGGGACACTGCTCCCCGCCCGCGCGGGGATGGACCCGGTCCCGATCTGCCGGGCCTCCTGCGGGCCCTCTGCTCCCCGCTCGCGTGGGGATGGACCCGCGATCAACCCCAAGGACTGGCTCGACCCGGTCTGCTCCCTGCCCGTG # Questionable array : NO Score: 4.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:0, 6:0.25, 7:-0.51, 8:1, 9:0.05, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [75-74] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //