Array 1 1052-3016 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUK01000006.1 Salmonella enterica isolate STY146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1052 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1113 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1174 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1235 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1296 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1357 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1418 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1480 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1541 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1602 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1663 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1724 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1785 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1846 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1907 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1968 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 2029 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 2090 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 2151 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 2212 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 2273 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 2335 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 2438 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 2499 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 2560 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 2621 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 2682 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 2743 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 2804 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 2865 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 2926 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 2987 29 96.6 0 A............................ | A [3013] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16412-15102 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEUK01000054.1 Salmonella enterica isolate STY146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16411 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 16350 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16289 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16228 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 16167 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 16106 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16045 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 15984 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 15923 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15862 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15801 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15740 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15679 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15617 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15556 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15495 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15434 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15373 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15312 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15251 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15190 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15129 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //