Array 1 415-1438 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXR01000041.1 Neisseria meningitidis strain NM1446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 415 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 481 36 100.0 30 .................................... TTTGATAAAGGTTTCTGTTGCGACCCGAAT 547 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 613 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 679 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 745 36 100.0 30 .................................... TTTGAAACCGCAAACCAGTTTGTATCCTAT 811 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 877 36 100.0 28 .................................... AAACAACCATTTTGTTATTTCGATTTTT 941 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 1007 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 1073 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 1139 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 1205 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 1271 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1337 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 1403 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCCTTTCTCATTTCGCAGTGCTACAATTTAAAATAATAACCCAATACACGATGTTAAGTTGTAGCTCCCTTTCAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //