Array 1 2186-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEN01000062.1 Aliiglaciecola lipolytica E3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2185 28 100.0 32 ............................ CATGAATGGACAAACTGAGTATACCCCAATTT 2125 28 100.0 32 ............................ AGTTCCTACTTTAAAGGCGGAAACACACAGTT 2065 28 100.0 32 ............................ ACACAAGGGCTGCGCGAGACGCGCATGTATAT 2005 28 100.0 32 ............................ TCCTGGTCAACCTAAGAACTCCGACGCATTTG 1945 28 100.0 32 ............................ ACGTTGGGTGAATGGAATCACTTTGATAGAAC 1885 28 100.0 33 ............................ TCAGACATATCAACTAGAATCATAATACGTAAT 1824 28 100.0 32 ............................ TGATTAATCACAAGTAGATTGTCATCTAAATC 1764 28 100.0 32 ............................ CAAATCATGCCGTCATGAATAGTTACTTCTTG 1704 28 100.0 32 ............................ AGCAAGATAATAGAAATGCGATGCCATAAGCA 1644 28 100.0 32 ............................ AGCCGAATTGGTTGTTGATATGGAAGATGAAG 1584 28 100.0 32 ............................ TTCCCTTCTCTCAATCTCCCTGTTGATGTACC 1524 28 100.0 31 ............................ TTAATAAAAAGTATATTCCACTAAACTTTTT 1465 28 100.0 32 ............................ ATACTTTAATGTGTGCAAGTTTAGTGCGCCAT 1405 28 100.0 32 ............................ AGCCAGTGCAATGCAATGGTGTACTCAGGAGT 1345 28 100.0 32 ............................ TCTGCTTTAAGCATTGGTTCACCTCTCCATAC 1285 28 100.0 32 ............................ CAAGTGGAGGGTATTGCACCGACCAGATAAAA 1225 28 100.0 32 ............................ TTGCACAGAATCGGCGAGCTTGTTGTATTCAG 1165 28 100.0 32 ............................ TAATGTCGAAATAGAATACGGGACAACGCACG 1105 28 100.0 32 ............................ TGCTGTAGTGATGCCCACCTCTGCATTTATAA 1045 28 100.0 32 ............................ GTTTACACCCTCTACCGGAACAACATCGTAAT 985 28 100.0 32 ............................ ATTGAACGCATGGCGTCGTCTTTGCTCATCCA 925 28 100.0 32 ............................ TCACCAGCTGACGGTATAAGCATTGATTCTAA 865 28 100.0 32 ............................ TTAGTGTGTTATTGGAAATATTCAAGTAATCA 805 28 100.0 32 ............................ ACTTTGTGCGTAAAGATGGTGAGGTTTATAGT 745 28 100.0 32 ............................ AGCAAGCAGGATTGACCTTGGTGAACCCCTTA 685 28 100.0 32 ............................ ACTACCCGTTGCAACCGCTAAGCCAGCTTCAA 625 28 100.0 32 ............................ TCTTGCGCATGTTGTATTGTTGCTGCAAATAT 565 28 100.0 32 ............................ GCTAACAAGTACGCCATAGCCAGTTGAGAAAT 505 28 100.0 32 ............................ GTAGAGAAAAAGAGGAGGCAAATATCATGTCA 445 28 100.0 32 ............................ AGCCTAAACGCTGGTAATGTGTTCGTGTTTAC 385 28 100.0 32 ............................ TTATAGAGTAACAATGATAAATCACGAGGGTT 325 28 100.0 32 ............................ CATCTGCGTTATTGTTTTGCAATTAAGCATTA 265 28 100.0 32 ............................ TGTTATCATTACAATCCCGCCAAGCTCTTTGT 205 28 100.0 32 ............................ CTGATGTTTGCGTTGTAATGGCTGGCACTAAT 145 28 100.0 32 ............................ CCGCAATGAGCGCTCTTAGCTGCATATCACTT 85 28 100.0 32 ............................ TGGAAAGTCTTGATCTAAATGAAAACCTCGCT 25 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.7 32 GTTAGCTGCGGCACACGCAGCTTAGAAA # Left flank : ACGATTAAACATTCATAAATGGTTAAGCCGTTTAACGGATTACCTGCATATTAAAAATATTGCGGATGTTCCGGCTGATGTTGATTCATTTGAAAACTTTAATCGTCGACAAAAAGCTGGGAGTCCAGATAGACATATTCGGCGAAGAATGAAACGGCATAATGAAACATTTGAGCAGGCGAGTCAGCACTTTGTTGATTATGAAATGTCGGAGGAAGATAAAGCTCTGCCATTCATAAAAATGAAAAGTCTTGGTAGTGATAATGACTTTAATATGAGTGTTATTAGAAAAACGGTGGCACTAAATAATGCTCCAGTCATGTTCAATACTTATGGGTTAAGTAAGCAAGGATGTTTACCTAAGTTTTAACCTTTAATTTTAGCTCTTTAAAAAATTATAATTAAATCATTAAGTTACAATATGTAGGTAAATATAAGGTAAAAATTAGAATTTTTATCTAACTACATGTTGTAACTTATTTTTTTGTCATTATTCTATT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCGGCACACGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAGCTGCGGCACACGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2-929 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEN01000060.1 Aliiglaciecola lipolytica E3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2 28 100.0 32 ............................ GTCACAATTTAGAAGACTAAAAAGGTGCTAAA 62 28 100.0 32 ............................ TGTTTACTACCCTCTACCTGTACGGCCGAGCC 122 28 100.0 32 ............................ TCTTTCAAGAAGACAGATTGAGTGTAGATTTC 182 28 100.0 32 ............................ TTTACGATTCATATCACCAAATTGGCCTCTAA 242 28 100.0 32 ............................ TATCAAAGGGGCTTTTTTATTACCTAAAATAC 302 28 100.0 32 ............................ TATTAGTGAATTAAAACCTTTATGGTTTAACA 362 28 100.0 32 ............................ TATCAGAGGGGCTTTTGTTTAGGGGTTTAGTT 422 28 100.0 32 ............................ ACTACGCAAATAATGTATACAAGAATCAAAAT 482 28 100.0 32 ............................ ATCTGAATCTCTCCCTAATCACTTCAATAGGA 542 28 100.0 32 ............................ TATAACCCGCAAGGGTTCTAGCTCTAAAAGCT 602 28 100.0 32 ............................ AACTAACGCGCAGTGGAACGACTACATGAAGA 662 28 100.0 32 ............................ GCCGAGCCCAGCCAACAAAATAAACCAAATGT 722 28 100.0 32 ............................ TTGCCATCCAATGACATTGTGCGTCTAAAATC 782 28 100.0 32 ............................ ACTCAGAAAGATGGTTTAAACCAATAACGTTC 842 28 100.0 32 ............................ AGTTAATACATCCTGCCCAGGCACAATTGATT 902 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTAGCTGCGGCACACGCAGCTTAGAAA # Left flank : GG # Right flank : TCTCGCTTTTGCACATCTGTATTGCGGTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCGGCACACGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCGGCACACGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45309-45657 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEN01000058.1 Aliiglaciecola lipolytica E3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================== ================== 45309 34 100.0 46 .................................. TTTCCAGTGTGTCGCTTGATGTTTTAATTTGATTCTACCTCACGGG 45389 34 97.1 46 .......................C.......... CATCCCGTGGATTGCTTGATGTTTTAGTTCGATTTAACCTCTCGAG 45469 33 94.1 44 ........G.-....................... TTTCCCGTGAGTCGTTTGATTTTAGCTTAATCTAACCTCGCGAG 45546 34 97.1 44 ...............G.................. CATCCCGTGAGTCGTTTGATTTTAGCTTAATCTAACCTCGCGAG 45624 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================== ================== 5 34 97.7 45 GCTAAAGCCCCGCCTACAGGTGTAGCACGGGATT # Left flank : TAAACAGTTCTAATCAGCGTCATTGGGAACAACCAATGCAGGATTATATTAATGATCTGTTGGCTGGCGATGAAGGCCCACGAGGTAAAAACTTCAATATGCGTTGGGTTGGCGCGATGGTAGGCGATATTCATCGTATTCTATCTCGTGGCGGTATTTTTGCGTATCCATTTGATAAACGTAATCCTAAAATTCCAGGCAAGCTTCGCTTATTGTATGAAGCAAACCCAATGTCATTCTTAATCGAACAAGCCGGTGGTGCAGCAACCACAGGTGAGCGTCGAATTTTAGAGGTGATGCCGCATGAAATTCATCAGCGTGTACCTGTGATTATGGGGTCTAAAGAAGAAGTCGAAACTTGTATGACCTATTACGAGTAATTGGCCACCAATTTTATATCCAACGAATTTTCTAATTTTATCTCACGGGGCTAAAGCCCCTGTCGCACGGGATTTTTCCAGTGTGTCGCTTGATGTTTTAATTTGATTCTACCTCACGGG # Right flank : TTTTCCCGTGGATTGCTTGATGTTTTAGCTTGATTTTACCTTGCGGGGCTATAAAGCCCCGTCTACAGGTTTATTGTTTATGATGTGGTGAGCAGAGGTGCAATCACCAAGCTCACGATAGCCATAACATTGATTAGTATGTTCATCGCTGGGCCTGAGGTGTCTTTGAATGGGTCGCCGACAGTATCACCAACTACAACCGCGGCATGTGTTTCCGATCCTTTTCCACCCAAATTGCCTTTTTCAACGTATTTTTTGGCGTTGTCCCAAGCTCCACCTGCATTTGCCATCATCAAAGCAAGCAACACGCAGCCTAACAATGCTCCACCTAACATCCCGCCTAAGGCGTGTGCTCCCAACCCAAATCCAACAATTGGGGGAACAGCTACTGCAATCGCGCCGGGTAAAATCATTTTTTTCAACGCAGCTGTAGTTGCAATATCGACACAACGACCGGTATCTGGTTCGGCTTCGCCTTCCATCAAGCCTTTAATTTCTCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAAAGCCCCGCCTACAGGTGTAGCACGGGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 36-786 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAEN01000014.1 Aliiglaciecola lipolytica E3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 36 28 100.0 32 ............................ ATAAAGGGTTTACCAGAACCACCGAGCAACCA 96 28 100.0 36 ............................ TCTTAATTAATTAATTAATTGAACACACTGGCTAAA 160 28 100.0 32 ............................ GTTAATGCTGAGCTAGGTACGATTTCTTTGAT 220 28 100.0 32 ............................ ATCTCAATGCAATCCAAGCTAGACCACGTATA 280 28 100.0 32 ............................ CATGGGTAGATAAAGCTATTGCGGCACAACAA 340 28 100.0 32 ............................ GACAACGTGGGACAATCAAATGATAATGATAG 400 28 100.0 31 ............................ ATATATGGCAGCACCTTTAAAAACAGTAAGC 459 28 100.0 32 ............................ GAAAAGCAAAACCTGAAAAGAATATTAGCTTA 519 28 100.0 32 ............................ GAAAAGCAAAACCTGAAAAGAATATTAGCTTA 579 28 100.0 32 ............................ ATAGCTAGAGGCTCCTGATATAGTGCAACTCT 639 28 100.0 32 ............................ TTCAAAAATATTTAAGCTCTACGCTTCAACGA 699 28 100.0 32 ............................ TGACTTAAAGCTCAAGGCGAACGTTTATTACT 759 28 75.0 0 ...T.....C...G.AA...T......G | ========== ====== ====== ====== ============================ ==================================== ================== 13 28 98.1 32 GTTAGCTGCGGCACACGCAGCTTAGAAA # Left flank : AAATCTTTCGAGGGCAACCACCACCCCGCATACAGG # Right flank : GTTAACAGAAGTGACAACTTAATGGAGCAATGGACACTCAACTAGACAATTGCTTTTACACAAAGATATGATGAGGTTGCTTTAGCTATTATCACTTCAATATGCCTTTGGACATCAGCGTCAGATTATTGATAAGGAATCAAAAATGAAAAAAACTATGCAGTTATTGGCTTCGTTGTTTGGGGTTGCAATAACGACTGTGAGTGCGCAATCAATACCTGGGGCAGATATTTTTATAGCGGACTTGTCTGTGCAAAATGGGCAACTCAAATTAGGTGAGCTTAAAAATATTAGTAGCCGAAAGGGATATGATAATCAGCCTTATTTCCTAGCGGATAATCAAACGTTGCTTTATACCTCACAAATCGACGGTCAAACCGATATTTTGCGGTACAAGATTAACACTGGTGAAACAGAAAACTTAAGTTCTAGTCCTGAAAGCGAGTATTCGCCTACGCCTATGCCTAATGGCACTGAGTATTCGGTGATTTATGCCGTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCGGCACACGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCGGCACACGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //