Array 1 51597-52600 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNZ01000010.1 Salmonella enterica strain BCW_1560 NODE_10_length_162049_cov_2.41989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51597 29 100.0 32 ............................. AAAACAGACTTTGACCGAGTCTGATATTGCGC 51658 29 100.0 32 ............................. ACCCGGATCGTTGCTGTACATCGCAGTAGCGG 51719 29 100.0 32 ............................. TCGATCGGCTTCGTCTGCCCGGCAGCCAGCGA 51780 29 100.0 32 ............................. CTAACGAGGATACCTCGTTCAATGGGGGCGGC 51841 29 100.0 32 ............................. CCGTCGAGGCAACAAACAGCCAGATGATGGGC 51902 29 100.0 32 ............................. ACTTCCTGAGTACCGTAGATCATAAGACCCCC 51963 29 100.0 32 ............................. ATTACCCAGCCCGGTGCCGTCCAGGTATTCTT 52024 29 100.0 32 ............................. ACTCGTACGGAGAAATCGCCATCCTGTAAAAA 52085 29 100.0 32 ............................. TCTGGATACCGGGGGTACGAGCGGTTACACGC 52146 29 100.0 32 ............................. CCCGCGCCGGGGTGAGTTTTATACACGCAGTA 52207 29 100.0 32 ............................. GTTGCCCGATGCGCAGCCGGTAACTCATGGCC 52268 29 100.0 32 ............................. CATTATCAACATATATCTGGCAGTAACTCGGT 52329 29 100.0 32 ............................. TTTATGCCTCCACTCCAGATGAGGCGAGGGAG 52390 29 100.0 32 ............................. ACGCCATGATCAAGAGCTTCAAACATAAGGGC 52451 29 100.0 32 ............................. TATTCAGATATAACCAGCACAAGAAGTTTTAA 52512 29 100.0 32 ............................. ATCACGCGCCCGAAACCTACACCGGCTTATTC 52573 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATGAAATCAAGCATCCTGTTGGGCGAGTGCGTGATATTGAGGCACTGGATGAATTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTAATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTAATCTTATAGACGGCCTGTCGTTGCCGTCTGTGGCTCATCTATTCCCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCACGGATAAATTTTTCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATTATTCTATGAATTTTTTTGTAGCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAAGTAATTCATAAACAATGATATACATGTAGT # Right flank : GTTGCATAATCATAATCTGTGTGCCAGTAATGGCTGGTACAGACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTATACAGGAGAAGGCTATGGCGTTAAGGATCTGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCAGACCTGGATTAAGCCTGTTGGTCCAGGATGAGTTTACGTCGATCTTGTTCGATACCGGGCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATGACAGTCGAATTATCTGCCATCCAGATATTGCGCGTGAACGCTATGCGGCAATCAATTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //