Array 1 429172-430479 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQA01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 118 NODE_2_length_722152_cov_17.2679, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429172 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 429233 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 429294 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 429355 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 429416 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 429477 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 429538 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 429599 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 429660 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 429721 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 429782 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 429843 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 429904 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 429965 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 430026 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 430087 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 430148 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 430209 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 430270 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 430331 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 430392 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 430452 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447149-448825 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQA01000002.1 Salmonella enterica subsp. enterica serovar Newport strain 118 NODE_2_length_722152_cov_17.2679, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 447149 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 447210 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 447271 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 447332 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 447393 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 447454 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 447515 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 447576 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 447637 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 447698 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 447759 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 447820 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 447881 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 447942 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 448003 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 448064 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 448125 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 448186 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 448247 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 448308 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 448369 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 448430 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 448491 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 448552 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 448613 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 448674 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 448735 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 448796 29 100.0 0 ............................. | A [448823] ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //