Array 1 9555-10904 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCI01000022.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9555 28 100.0 32 ............................ TTACGTACAGTCTGTTTTGGGAAAGCAGCGAT 9615 28 100.0 32 ............................ TGTATGTGTAACTGAATGCACCGGATGCTTCG 9675 28 100.0 32 ............................ AGAGGTGACTAAGACAAGCTCCCCTAATCTGG 9735 28 100.0 32 ............................ TGTTGCAGCCAGCGCCGCGCCTAAACCTTGCT 9795 28 100.0 33 ............................ TCCAACACTATTTACTAAGACTCTATTACCTAA 9856 28 100.0 32 ............................ AGTTGTCGGCGTTGATGGGTGGGCAAGAATTA 9916 28 100.0 32 ............................ GTCAATCTACCAACGGACGGAATTAACTTGCC 9976 28 100.0 32 ............................ ACGATAGTCTGGGAGGATTTCCCAACGGCTTT 10036 28 100.0 32 ............................ ATTACCGCCCCCACCGCTTGGATCATAGCCAA 10096 28 100.0 33 ............................ CGGGTCATTACCCCTGAGTCGACACCACATAAT 10157 28 100.0 32 ............................ TCACGACAGATGCTACAATAATCGTTTCTGCG 10217 28 100.0 32 ............................ GCGACATAGCAATAAGCTCTTTGCTGCAACGC 10277 28 100.0 32 ............................ ATTACCGGCATTAATAAATGAAATCCTGCCAC 10337 28 100.0 32 ............................ TTCGAGCTTAAGCATAAACCCATCTCCGAGCA 10397 28 100.0 32 ............................ ATTCGGATAGCAAGCGATGCCTAAAGGTCAAC 10457 28 100.0 32 ............................ TGATGGATGCTCAAACTAGAAAATGTTGGGAA 10517 28 100.0 33 ............................ CTCGAACAACATACTGCCAAGATATTCTCAGAT 10578 28 100.0 32 ............................ TGATGAAGCTAAGGACAGGTTAAAGTTACAAT 10638 28 100.0 32 ............................ TCAATCTGTAGCGTTGAGATTCATCCGGCTGT 10698 28 100.0 32 ............................ GCGAACGTCAGCGTTGGGCTTTGAAGTAGACA 10758 28 100.0 32 ............................ ATTTCCGTGTAATTAATCCCGTAGTCACAGAT 10818 28 100.0 32 ............................ TGAGTGCTAAAGCACCAGCGAACGCGAATGCA 10878 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTAATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGCAAACTTAAGGCGTTGGATGAGAAACGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATATTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAATAACCCATTGATTTAAAAGAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : AGCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCAGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTCAGGTTAGCTGTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30746-31375 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCI01000022.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30746 28 100.0 32 ............................ GTTCGATATCATTCTTTGTATCACGTATTTCT 30806 28 100.0 32 ............................ GGCAGACAGAGACCTGAATTATTTCAGTCAAC 30866 28 100.0 33 ............................ ATTTCATAGCGTCTACAGCCGCTACCACAGTAA 30927 28 100.0 32 ............................ ATTTGATATGGAGGGTAAAAAGTTAAGAACGA 30987 28 100.0 33 ............................ TATCAATATCTCAACGGTTGTACCAAGAATCAT 31048 28 100.0 32 ............................ GATGACAACAGCATTCATTGAGTGTGCAGGAA 31108 28 100.0 32 ............................ TTGTATAGCAATTGCGATAAACTCACGTTTTG 31168 28 100.0 32 ............................ ACTTTCCCATCTGCATCTAATTTCAATTTCAT 31228 28 100.0 32 ............................ ATAGCATCTACAAGTCCAGTCTCACCCGTAAA 31288 28 100.0 32 ............................ AGACGGATAACCATCCACTTCATCAAACAAGA 31348 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGATTTGCAGTCTTTATCTTGGTTAAAAGGACTCCGGGATTATACTGAGGTGATTGATATCCAGCCAATCCCTAAGGATACTCGATATCGTCATGTTAGCCGAGTGCAGGTAAAGAGCAGTGTAGAGCGGCTTCGTCGTCGTTCGATCAAAAAAGGATGGTTAACGGAGGAACAAGCCTTGCAACGCATTCCTATCAGCAAAGAGCAACGTTCTGATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGCTTTTTGTTGTTTGTCGAACAAGGACCAATAGAAGATAAATCAACACAAGGAGTTTTCAGTTCTTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTGTTCGATATGCATCAATTGATATGTTTTTGTGCATATTCTTCACTGTTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGATAGCCTTTGGGAACCATTACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACGCGTTGCATGCAAAATCCTTGAGATGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGTATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTACAGCCTTCACCGGTAAAGACTTCAACCACCAACAAGCTATTAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 169283-169611 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCI01000001.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 169283 28 100.0 32 ............................ CTATCAATTGATGGACGGAAAGCCCGACAATG 169343 28 100.0 33 ............................ GTGAGGCAAAAGAAGCGGCGGAAGCCAGGCTCA 169404 28 100.0 32 ............................ ATGCGGGCGCGGGAACCGGCTTCACTCTTTGG 169464 28 100.0 32 ............................ AGTAAGCGACCTCACATTCTAAATGTTCATGT 169524 28 100.0 32 ............................ CTAAATATTGAACGTACAGCCCAAGCGCTGGA 169584 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGTGGCCGTGGAGTTTTAACTCATCAGGGGGATGCTATTAGAAATATTGAGGGATCATTTCCTGGAGCGATAGTAGCTCATTTTGAGCTGGCAACAAAAGGGGCTTTTTATGGTAATGCAACTTTGGGTTCCGCTACAGATGGTAATCCTAAATCAGTAGGTCATTTTACCCCGGATACTGTATACACTGCATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCCCGCAACATAGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATATGCTTGATAGCCGGAAATAGAAAGAGAGACTGCTTTCTATTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : AGGCAACGCTACGTTGTTTTCCTCAGATTTGCGGATATGTTCTTCTAGGCGGTAGCGAGTCATATTAAGATGATAACGGGTATAAAGCTAATTCGTTTTTGGTGGTAACAATATTAGGGTTATCTAGATCCACTATCTCATCTGGTTCTTTCGAATTTTCTTGGAGTTCTATTTCGTCTTGAACTCCATCAATCGGAGCATGTTTATTTGAAAGACCGGAAACCACCATTGCGCTGACAGATTTCTCAACAGCCTGTTTTACCAACGGGGTGATTGATTCAATATGATTCTTTCGTGCATCGTTTTCATGCCTTAAATATACAAGCGAGGCTTTTATTTTTATAGCAAGTAAGACTTTATTTTTAAAGTATTTATTGTATTTTGTTTGTCGTTGTTAGTAAAAGAAGAAAACTTTTATGAACATACTGGATATAGCAATAAAGGAAGTTGGCGGCATACCAACATTAGACAAAATGCTAAGTATTAGGGATCAGGTGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173029-173417 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCI01000001.1 Photorhabdus laumondii subsp. clarkei strain BOJ-47 BOJ_47_scf0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173029 28 100.0 32 ............................ TACACTCCGATAGAATACATCACATTCAACCC 173089 28 100.0 32 ............................ ACCTACTGACCGTACTTTCTATACTACACCAG 173149 28 100.0 33 ............................ CAGAGAAGGGTACTCTGCGTAATGTTATGGGAT 173210 28 100.0 32 ............................ TGTTGCGTCAGACATACGGCCTATGGCGCGTT 173270 28 100.0 32 ............................ TCTCCCCAAGCTGTCGTTTTGTATGATATTTT 173330 28 100.0 32 ............................ CGTTTCAACAGAGGAAATCCAAGAGCAGTCTT 173390 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTGTCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGAGTTAATATGTAACA # Right flank : AACAATGATGTTAGGAAAGCATGTTAGGAAGGGGAGGGGCCGGCATAAAAAAAAGCCACCTTGCGGTGGCCTTTTCTTTTTCCTAACTCACTGTTTTACAGCAAGTTTTCATTTGGTGCCCAGGGCGGGACTTGAACCCGCACAGCCTTACAGCCGAGGGATTTTAAATCCCTTGTGTCTACCGATTTCACCACCTGGGCTGAATTTGGAGGCGCGTCCCGGAGTCGAACCGAGGTTGACGGATTTGCAATCCGCTGCATGGCCACTCTGCCAACGCGCCTTTCTATATTCAACGACTAATTCAGCATCCAACTTCTGAACAGTAATTTGGAGCGGGAAACGAGACTCGAACTCGCGACCCCAACCTTGGCAAGGTTGTGCTCTACCAACTGAGCTATTCCCGCACCGCTTTGAACTAGCTGATTTACTTATTTGTTTTCGTAAATCTCATGTGCCGTTCGATGCGTTGCATTCTACTTACTTCACGTATCGAGTCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //