Array 1 4799-3243 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUT01000076.1 Escherichia coli strain MOD1-EC6622 MOD1-EC6622_76_length_13714_cov_25.3417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4798 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 4737 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 4676 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 4615 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 4554 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 4493 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 4432 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 4371 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 4310 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 4249 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 4188 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 4127 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 4066 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 4005 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 3944 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 3883 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 3822 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 3760 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 3699 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 3638 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 3577 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 3516 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 3454 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 3393 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 3332 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 3271 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18013-16947 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNUT01000012.1 Escherichia coli strain MOD1-EC6622 MOD1-EC6622_12_length_108415_cov_28.0447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18012 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 17951 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 17890 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 17829 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 17768 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 17707 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 17646 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 17585 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 17524 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 17463 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 17402 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 17341 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 17280 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 17219 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 17158 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 17097 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 17036 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 16975 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //