Array 1 111467-112865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXSH01000016.1 Eikenella corrodens strain NML120819 Eikcor_contig000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 111467 33 93.9 31 CT............................... GGAGCGGCAGTAGCGGATAAAGCGGTCGTAC 111531 33 93.9 32 AC............................... TCAGGCTACCTGAAAACCAGTTATTAAGTATT 111596 33 93.9 31 AC............................... AAAATAGCCATCTATGGCGCAAAGTAGCCCG 111660 33 93.9 32 TC............................... CCTTTTTTAGGGCGGCAAAAACCCTGCTGCAC 111725 33 97.0 33 .C............................... GTTTTAAAAGGATTGGAAAACGCCCGCCGCTTC 111791 33 100.0 32 ................................. AAGCCCTGCACCTGACGGATGACGCCGAGCAT 111856 33 100.0 32 ................................. CGGGCAGAGCGCAATGAGCTGCTGCTTTTTGC 111921 33 97.0 31 .C............................... TGCCATCGGCGGCGGAATCGGCAGCCAGCGG 111985 33 93.9 33 CA............................... CAAACGCGGGCAGCCGCAAGATTACGTTGGATG 112051 33 100.0 31 ................................. AAAGTATCCGTCCAGTGCGCAAAGCAGCCCG 112115 33 93.9 32 TC............................... GGCATCAAAGCGCTGACCGCCGCCATTAACAC 112180 33 100.0 31 ................................. TTCGTACCGCAAGAATCGAACAAAGAAACCA 112244 33 97.0 33 A................................ ATTGGCATACACGTATTCGTTATCCAAGCAGCC 112310 33 93.9 33 TT............................... ACTGCATGCCCTAAGAAGCCCGCTGTTTTATCC 112376 33 93.9 32 CT............................... GGCGTAACGATCCAGCACGATCTGCACATGGC 112441 33 97.0 32 .T............................... CGCCTTGGTGGCCGGCGACCTGCTCGTACGCC 112506 33 93.9 31 AT............................... AACCGCGCCGGAGAGGATTTTGCCGACCAGC 112570 33 93.9 32 AA............................... GGTTTCAGCCTGTGCCGGCTGCTCTGTCTCGG 112635 33 93.9 33 CA............................... TTATACAGTGAAGATATAATACAACAAAAATGT 112701 33 97.0 33 T................................ CCGCCTTGCCGAGCGCTACGATGCCATCGCCAC 112767 33 90.9 33 CC.....A......................... AGGATTTGGGGCAACCGCACCTGCTTCAGCGAT 112833 33 81.8 0 CC.....A....TA........C.......... | ========== ====== ====== ====== ================================= ================================= ================== 22 33 95.0 32 GGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCGAAATTGTGTCTTAACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCGCCAGACCAGTGGGTTGTTTTAAAGGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGACACGTTGATTGTGTGAATCGCCAACCTGTGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATCGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGTTTGGCGAAATTGGGGCTGCGAAACCTGATAGAGCAAGGCTTTTGAGAGAGG # Right flank : CCTCAATCACCTGTTGAGCTTCTTCCGGCTCCGGGCCAGCCGCCTTCGAACTGCTGTCCAAACTAGACCCAATACCATACTACTCTAATTTTCAGGTAGCCTTTACCATTTCGGCTCAACCACAGCTGATAGCGGCAAGTGGTCGGAGAGTTGTTGCCATGGTAAACCTTGATGGCTTACCGCGTTTAATACGGTGAGATGGCGGGTGTAGATGCGGTCTAGGCTGAGTATCGGCATTCTTGCGGGGAAGGTTTTCGGCCGCCCGGCGGAAAGATGGGCGAAAGCTTCGTCTAAGCCAAGCAGTTGACCGAAGCGGCTGCATGAGCGTTGCCGCCAGTCGTTGAAGTCGCCGGCAAGAATCAGCGGGGCATCGGATGGAATTTGGTGTTCGATATAGTCAGCAATGGTGCGGTATTGCCGTTTGCGGTCGGCTTCACGCAGATTGAGGTGTACGCAGAGGCAGATAAGCGGCCTATCCCAGCCGGGTGGTTGAATTTCGC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //