Array 1 37178-35689 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTDA01000004.1 Lacticaseibacillus paracasei strain LactoQK scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 37177 36 100.0 30 .................................... TCTCAAGTAGTGGCACCATCTGCATAACAT 37111 36 100.0 30 .................................... CGAGTCGGCACGGATTCAACATGCGGCACA 37045 36 100.0 30 .................................... ATACAAAAAAAATCATACAGCCTGCATCAC 36979 36 100.0 30 .................................... CACTTGATGCTCACGCCATCCCAAGCATTT 36913 36 100.0 30 .................................... CGGCATTGCCTCGGCGCATGGCTGGGGTGC 36847 36 100.0 30 .................................... AAAAACAAAAGTTCAAAAGCGTGGTTCAGC 36781 36 100.0 30 .................................... CTAAACGTTCGCGAACCTCATTCAAGCTAA 36715 36 100.0 30 .................................... ATGGATGATGCATTTGATCGACAGTGGCCC 36649 36 100.0 30 .................................... TTTAGTTAGTCGGTCAATGTCTGCTACTCT 36583 36 100.0 30 .................................... GTGTTAGACTTAGATGTGGATGTTGCCCCG 36517 36 100.0 30 .................................... ATACCAAGGCGGTGGCATGGCGTATACTGA 36451 36 100.0 30 .................................... AGAACTGGACGCCGAACGCTTGGACACGCC 36385 36 100.0 30 .................................... CCCTTTCGCCGCCATCTTTGATCGCCCACG 36319 36 100.0 30 .................................... GCTATCTGGCTTGAATTCCTTAATCGATTT 36253 36 100.0 30 .................................... GAGGCTTACCCCGTCTTTACCAGTTGGTCC 36187 36 97.2 30 ..............C..................... TTGTTCATAGCAGCGTTGGCACGGGTATTG 36121 36 100.0 30 .................................... CGTGTTATTGTAATTAGTCGCCAAGTCTTG 36055 36 100.0 30 .................................... GCTGTCAAGTATCTCATGTCCTTCTAGAAA 35989 36 100.0 30 .................................... AACGTTGACCGCTCTGTCTCACGAAACTGG 35923 36 100.0 30 .................................... GAACTTTGTATCGTTTCTCTTTGCGCACGG 35857 36 100.0 30 .................................... ACGTTAAACGTACACCATGCCGCACAGTCC 35791 36 100.0 30 .................................... GACGATCTCGCACATGCTCAGTGATATGCG 35725 36 91.7 0 ..........................T..A....C. | T [35693] ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGGATTTAATTCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGACTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAATGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCA # Right flank : CATAATTCCGAGAAAATGAATTGGCGGATTTTAGAGTCAATCTCATGCTAGAAATAACCAATTCCGCAACTTTAACGTCTTCGGTCTGGTTAGCGTTCGCAATATTGATGGCTCTAGCAACTCAGGTAATTGCCGGTGCGGTTTTCGTGGACCGCTAACATCTTTATTATGCCGTCAGCCATGCTTCAAAGTTAGGGATGTCTTTAACGTACCTGCTGGTGTTGACTATGACATCTGCTACTCAATTAATATTGCCGATTTGCTGACTACACAACTGCCTCTGTAGTGGGAATATAGGCAGTGACGCCTGTAACAATATGATTTAACATTCAAGTTTCTTCAAGGGAAAACATATGCGAGTGCTCATGTCCTTCAAAATGTTTGATGACTGCGAACATCATCGATTATTGTGAAACAGCAGGCATACCTGTCTAAACTTTTTTCGATCAGTGCTTAATTAACGAAGTTCTTCTGTGTCAGTCGCAACCTGAGTTGAGAGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //