Array 1 64509-63382 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIOQ01000081.1 Escherichia coli strain KCJK6238 NODE_23_length_72506_cov_9.5158_ID_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64508 29 100.0 32 ............................. CCCGGTCGTAAGAAACGACGGTTGCGGGGAGC 64447 29 96.6 32 A............................ GACAGACCAGTGGCGGCGGGGTAAATAAATGA 64386 29 100.0 32 ............................. AAAAATAGACTTTCCCGACTGGATCTGCAAAT 64325 29 100.0 32 ............................. GCTGCGCCGCCGACAATAAAAAATTGCTTTAC 64264 29 100.0 32 ............................. GGGCCGGATGGCTCCCTTTTTATGTATTTAAC 64203 29 96.6 32 ............................A GTTCACCGCCCTTCTCTACTACGCCCTGTAAC 64142 29 100.0 32 ............................. AGTGCCTGACGCACAAAAAACAGCGCAAACAG 64081 29 100.0 32 ............................. CCAGCGTTCCCGATGCTCAATTGGGCTGGTAC 64020 29 100.0 32 ............................. TATCAGAGGCGTGAATAGTTTTGTGTTTTTGT 63959 29 100.0 32 ............................. CTTTCCTGTTTGTGTTCCTGAATTCATATTTC 63898 29 100.0 32 ............................. TACCACCTGTGTATTGAGTTACGTCGCCGGGG 63837 29 100.0 32 ............................. GAGCTTCATCGGTGGTTCTGGGAGCAACGGGA 63776 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 63715 29 100.0 32 ............................. CCGCTGTCTTTATCCAGAACGCGCACGCTACC 63654 29 100.0 32 ............................. ATCTATTGGCGGAAATAGCGCCCGGTGCTGAG 63593 29 100.0 32 ............................. ATCGATAAAGGGGCCGGTCAGACGATCAGCAT 63532 29 100.0 32 ............................. AACCCACCGGTGCTGTCGATAGTATTGGCTAA 63471 29 100.0 32 ............................. GTCGGGCTGATATTCAAACAACGCGAGGAAAT 63410 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CTCTCGGTTCTGGGGTACTGTTACCCATAACTGAGTTCCCCCGCGTCAGCGGGGGAACTCCCAGCTCCCATTTTCAAGCTCATCAAGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTATGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3470-3803 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIOQ01000023.1 Escherichia coli strain KCJK6238 NODE_70_length_20866_cov_10.6634_ID_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3470 29 93.1 32 .........A..T................ ACCGCGTTTTTTTGCTCTGTACCGTTTTCGCA 3531 29 96.6 32 ............................A TGATCAGGACCCAATCAAACAGCAACAGAATA 3592 29 100.0 32 ............................. CGCGGAGCACGGCGACGGCTGTTCATCTTTTG 3653 29 100.0 32 ............................. TTGAATGGCTGATTGATGCGGCGGAAACATAT 3714 29 100.0 32 ............................. TACGTTAAACGCCATCTGTCATGGGTCGTCAT 3775 29 93.1 0 .T..........................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCTATTTTGCCCATTCTGGACTAATTATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATATGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //