Array 1 825383-826196 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483447.1 Porphyromonas crevioricanis strain NCTC12858 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 825383 36 100.0 27 .................................... ATCCTGAATATGAAACTAATAGAAATT 825446 36 100.0 29 .................................... TTGATGAGTTCTGCAAATTTCTCAAGAGA 825511 36 100.0 28 .................................... AGAGAGGCGTAAGTCTTAAATCCTGAAA 825575 36 100.0 30 .................................... TCGAAGACGTTGTAGCAGAATACGAAGACT 825641 36 100.0 29 .................................... ATAGAAACATCTGCAAAGCCAGATCGCTC 825706 36 100.0 30 .................................... GCTTACGTCCTTGCCACTATTCGCCTTGAA 825772 36 100.0 29 .................................... TCCAAAGCCGATCGAGTCTTGCAGCCTGA 825837 36 100.0 29 .................................... AAATATGTCGTTTCAGGCGAATATGGGTC 825902 36 100.0 29 .................................... ATCGAACGTGGACTAACAAAGCCTGAATG 825967 36 100.0 28 .................................... AGAAAAGGTTCGTGCAAGGAGATTTGCA 826031 36 100.0 29 .................................... TCACTCTTACTTATGATGATGCTATGTTG 826096 36 100.0 29 .................................... GATATCAAGAACGACTATTTGAAGCTAAG 826161 36 88.9 0 ..........................C.A...CA.. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.1 29 GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Left flank : TTGTTTCATGCAGAAGAAATCTGTGAAGAAGTACCCTCAATTCCTTATTTAATATGCTTATTATCAGTTATGACATTAGCAATGACAAACTCAGAAGTCGTTTCTCAAAGATGTTGGTGAAGAATGGAGCCATTCGTTTGCAATATTCTGTGTACGAGGTTAATAATACCAACAGAATGCTTGAGAACTTAACTATAAAAATCGATGAGCAATTCGCGAGAAAATTTGAGGGAGGTGATAGTGTGATTATTTTTGACGTCTCTTCCGTAAAGTTGAAGAAATATGGCAATGCAATCCATCGAGATGCGGATGTCGTTTTTCTCTGAATACAGACCTGGGTCTGTATGTTTTATGTCAATTTGCTGTAATTCTCTGTTTATGAGAACTATAGGGGAGCTTTTCTAGCTTTTTTCTTAGGGAGAGGGGAGAAAGAGATCTTTGATATTATTCCATAAATAATTGGTGGATACCAAATTATATGCTACTTTCGTCAGGGCAGA # Right flank : TGCAATGGAAAGCTGAAAAGAAGTGCATTTTGGAAAGTTCTTAATACACCTATTTCTTTCGAAATCATAAAAAGAGGCTGTGTCAAAATTCAATTTTGACACAGCCTCTTTGTTTATTATGTTATGGGGAAGCAGTTTATTGCAAATCCATTTCGGAGATTAATCGTTTGCACCCGGCATACTTGTCGATAACAAAGAGCAAATAGCGGATGTCGCAGATGATACTGCGTTGATACTCCGGTAGGTATTCGATATCGCCTCCTACACCTTCCCAGTTGCGGTCGAAGTTAAGTCCGATCAGCTCTCCTTTTGAGTTGAAGACTGGGCTGCCCGAATTGCCTCCCGTGGTGTGAGTTGTGGCACAGAAATTCACCGGCATACGACCATCACTCATAGCATACTGCCCAAAGTCCTTATTGGCGTAGAGCTGTTTGAGCTTGTCAGAGACATTGTATTCCCAATTGTTCGGGTCTTCTTTTTCCATTACTCCCAAGAGGGTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGGTACTCTCTTTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 1797627-1800033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483447.1 Porphyromonas crevioricanis strain NCTC12858 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1797627 30 100.0 37 .............................. TTATTACCTCCAATTCCTTTTCCAGAGAAGAAGTTTA 1797694 30 100.0 36 .............................. TCGTCTTGCGCGTTCATAGCACTCGAGGATGAAATA 1797760 30 100.0 37 .............................. TTGCTTATTTAGATTCCAATACTCCGTACTCTTCTCT 1797827 30 100.0 36 .............................. TCGTCTTTCCCGCATCAGCATTTTGCTTATTAGCAG 1797893 30 100.0 38 .............................. CAAAATCAGGCATACCAAACAGAACAATATGATAGTGA 1797961 30 100.0 35 .............................. TGCTCACAGAAGGAACAGACGACGAGGGGGGCTGA 1798026 30 100.0 36 .............................. TTAATAGGAGCTGCCCTTGTGCAGGGCGGTGCTTCT 1798092 30 100.0 37 .............................. AAGCCCTCTCTCGCTGGGTCAATCGGTATAGCTCTGC 1798159 30 100.0 36 .............................. GTGATGATGAAGCAACTATTCCCGATTTTCCTGCTT 1798225 30 100.0 37 .............................. CAGACATACCACCTAAAAATTCAGGACAATCATAAGC 1798292 30 100.0 36 .............................. GTACTTTGTCAGGAGGTATTACCCGGAGATACATTC 1798358 30 100.0 36 .............................. ATCTTTTTGACGGCTTGAACTCTTCTTCCTTAGTCG 1798424 30 100.0 35 .............................. TCGGGCGGTCGTCCAGTCCTTAATATCCTTGCGCA 1798489 30 100.0 36 .............................. CTTGTCGAGTTAGGGAAATTGAAACTCAAAGACCCC 1798555 30 100.0 36 .............................. AATCTTTGTCAGAAAAAAGAGGAGATTTTTTTGCTG 1798621 30 100.0 35 .............................. TTTCGCGAATTTATTCGATTCGGATCCCCTATTTG 1798686 30 100.0 36 .............................. TGTTTACAGAAGGAACAGACGACGACGGGGGCTGAA 1798752 30 100.0 35 .............................. AATGATGGCTCTATAAATCTTAAATTCTCTGATTA 1798817 30 100.0 36 .............................. CGTGTGCTCCCTGTTCATCTGAGAGAATATCACGTA 1798883 30 100.0 36 .............................. AACGAAATCGATTCTGTTGAGATACAGAAATGTTCG 1798949 30 100.0 35 .............................. GGGCAACAAAAATCAAAGCTTGATATATCGCACAG 1799014 30 100.0 35 .............................. ACGGAAAAGACTGCGTATAATCAGAGAACTTAAGA 1799079 30 100.0 36 .............................. CGATAAGCAGTATTTAGAAATAATCCGTGCGCACTA 1799145 30 100.0 36 .............................. AGCGACATATTTTCGCTTTCTGTCATGTTCGTAACT 1799211 30 100.0 37 .............................. ATAACAACCTTCATAATAATAGTAATTACTATCGCAA 1799278 30 100.0 37 .............................. ACACAGTAGCGTTCACGATAGAAAACTGACGAGACAA 1799345 30 100.0 35 .............................. AAGCGCGAAGGAAATCGCCACGCTTCATATCCTCT 1799410 30 100.0 36 .............................. GAGCCGAGCGCGGTCGAAATCAGCGCGACAATCATC 1799476 30 100.0 36 .............................. TTGGTCGGCACGTTAAAATGCACGCGTGTACCGAGT 1799542 30 100.0 36 .............................. CTCGGAGGAGAAGCAGAGCCCCTGGTTGGATTGAAA 1799608 30 100.0 36 .............................. AGATATGCAACGGTCGGAACACCTAAATAGTCATGC 1799674 30 100.0 35 .............................. TTCGTTCGATGTTCGATAAATCTTGGTGTGAGATA 1799739 30 100.0 35 .............................. GTAACTAACATTTGGCGCAGGCTTTGTGCCTGTCA 1799804 30 100.0 38 .............................. CTGCTCATTTTGCGTTTCTTTGTGAGCTTTGACATTTA 1799872 30 100.0 36 .............................. GGGCAGGGGGAGCAGTTCTGTAGGGCTTTGATTTTG 1799938 30 100.0 36 .............................. TGCTCTCGCAGTCAAGAAGAGAAAAGCGTTTGCCTT 1800004 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 37 30 100.0 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : AAATGTATTGGTAATGTATATCATACTCGTATATGACATAGGAGAAAAGCGAGTTGGCAAAATGCTAAAGTTGTGTCGCAAATACCTAAACTGGATTCAGAACTCTATTTTTGAAGGTGAGATATCCGAAGTCAAACTTCTCGAGCTGAAAGGATTAGCCCAAAAGCTAATGGACAAAAGAGAGGATAGTCTCATTATCTTTGCATCAAGACAAGAACGTTGGTTAGAAAAAGAAATAATCGGTAAGGAACGATGCTCCACTGATGTTTTTCTCTGATTAAACTCGGTTGGCTTGTCGAAGTAAGGGAAAGAAAAAAACAGTTCTACAAAAGAACCTTAGGCGATCTTTGAAATATTTGATTGTTAAGCAGATAACTAAGTCGTCATAGTCTCGGTAGTACTCTACAAATGCACTTCGACAACTTTAAGACACAAAAAAACGAATTCTTCTGTAGCAAGAACCCTTTGTTAATAAGGGAAATAACTGGTATTTTTGACGG # Right flank : CCTCTCAAAGAGGCAAGCACGCTGCTGCACGACGAAAGCGGACAAACAAAGAGCTTTGATCGCTTTTATCGAGACGTCGCAAAGCTCGACGCAACTTACAATCGCAACTACTTGCAAGCTGAGTATCTATACGCGACAGCAAGTGCCGAGAGCGCAGCACGCTGGACGGAGCAGATGCAAGACGCAGACGACTACGATCTCCAATATCGCACTGTCGGAGACAGCCGCGTGCGCGAAGAACACCGCGCACTCGACCTTGTGACTTTGCCCACTCGTCACGCCTTTTGGGAGACCTACTATCCCCCGAACGGCTGGAGGTGCCGCTGCACGGTTATACAAGTGAGGAAAGGCAAATACCCCACCACCGCGGACGCTGTTGCGCTGGAGGCAGGACAAGCAGCTATCAGCGACAAAAACAAGATTTTCAGAGGGAACCCCGGCCGGGAGGGCACTGTCTTTCCGGAAAATCATCCGTACTACGGAGAAGGCGGTTACGGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 3 1802956-1803381 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483447.1 Porphyromonas crevioricanis strain NCTC12858 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1802956 30 100.0 36 .............................. ACTACTTTTCGCAACTCTTTGTTAGACTTGAGTGAT 1803022 30 100.0 36 .............................. ACGCCACGATCAACGAAAAGCCCATACTCCACAAAT 1803088 30 100.0 35 .............................. GGATGGCCGTCCGCCTCATAGTTTTGCCGGAGGGG 1803153 30 100.0 37 .............................. GCGGTAGGGGCAATGAAAGCGATGCAAGAGCTACACA 1803220 30 100.0 36 .............................. GAGGACAATCCTATTGTCGTTTTTCTTTTCTGTGTG 1803286 30 100.0 36 .............................. AAGTGGACGGTGCCTGAATAGCTGACAACGGGTTGA 1803352 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 99.5 36 CTCTCAATCGCACCATATTGGAATTGAAAC # Left flank : GCACTTTTATGCAAAAGAAGAGGGGCCGCGCATCCCTGCGAAGCCCCTCCGAACGTGAAAATTTGAGAAAATTTGATATGAATAAAAATTTGATAAAATAGCTACCTGTAAAGCAAGTCTATAATTCTACGCAAGCCGACAGCGAAGACAAACACCGCCATGCCAACAAGGCAGGCCGTCGGCGGCAAGAGAAGCCAATATACCGGCACCTGTTGCAGGCCTACCAGGCGACCTGCAACAAGCACAATCCATGCCAACACCCCTAAAAAGGCCAAGAAAACAAACAGGATTTTAACTCCTTCTTTTACTTTCGCCTTATTGATTTTTATGAATTTCATATTTGTATGTTTTTTATTATTCATCAAATGAAACATTGAGCAATCCGACAATTGCACTCTTTTTTACGCTTTCGATCTCGCAATCTCTTGCGTTGAAACAAAAGCGATCAAGCTCCTCTTTTGCCCTATCCAAGTCACTTGCTTGCACAAGAGCAAGCTCGC # Right flank : AATAGGAAACAGCTCAAGTGCTACACAACAGTTTTGAAATAGTAAATCTCCTTACTGTTGGATAGCTTTACCGGTCTCTTGGGGAATAGAAGAAAAAGGGTATAAAGCCCAACAAAACCCCGACCATAGCATATACGAATATCTTCAGGATGGAGTCAAAACTGACACTATTGAGCAATGATTGCAGAAGCATTTCATCTATTGGAGCGGTATCCATGTAAACAATAAGGCTATCGAAAATAGCAAATAATGCTCCTATCAACCCTCCCAAGAATGGCACTAATGTGACAATATTATTCCTCGAGAATTTCATTAGAAAAATAATCCTTATAAATGCCCCAAGTTAATAAACGCATGGTTAATTCTACATAAGATTCGTATCAATTGGGATTGTAACTAAAGAGTTGACATCGGTCTTTAATTAAGACGATTTTGGGTTATCACCTTCCCAAATTAGCTCTTTGTCTCAATGTAGGGCATCGGTACAGAGCGAGATAGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAATCGCACCATATTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //