Array 1 6786-9074 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELY01000386.1 Thermus scotoductus strain 25_S25 NODE_44_length_13218_cov_52.545_ID_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6786 29 100.0 32 ............................. AGGGTCTTCTCCTGGGCAAAGGGGTAACTCTC 6847 29 100.0 32 ............................. CCGAAGGCGGAGGCGACCGTACCAGGAGCGCC 6908 29 96.6 32 ............................T CCTCGCCTTCTTCTCCTCCTTCCGGGCCGCCC 6969 29 100.0 32 ............................. TTCGTGGCGTTTATGGCGAGGTCGCCCTTCCA 7030 29 100.0 32 ............................. CTGACCCACGCCCACCTGGACCCCTTCGCCCA 7091 29 100.0 32 ............................. TGGTGGGCCTCGTCAAGCAGCAGAAGGGTGTC 7152 29 100.0 32 ............................. TCCGCGATCCAGGACTCGCCGATCTCCGCGGC 7213 29 100.0 32 ............................. ATGGCGGAAGGCCTCTTACGGATCTGGCAGGC 7274 29 100.0 32 ............................. CGGCGAGCCCAGCCCCGGAGAAGAGCCTGGGC 7335 29 100.0 32 ............................. GGGACGGGCTCCTCAGGCTCGAGCCTCGGGTC 7396 29 100.0 32 ............................. GCGGGGCGCTCCAGGAAGGGGACGGGCTCCTC 7457 29 100.0 32 ............................. GCGGGGCGCTCCAGGAAGGGGACGGGCTCCTC 7518 29 100.0 32 ............................. AGGCGAGGGAAAGCCTGGAGGAAGCGGCGGAA 7579 29 100.0 32 ............................. CCGTGTGGGAGGCCCAGCGCCTCGCTAAGGAC 7640 29 100.0 32 ............................. ACGGCTCGGGTCCAGCTCTCTCTCCGGGCCGT 7701 29 100.0 31 ............................. TGGCCCCGTCCTGGACCGAGCCCTGGGCGTT 7761 29 100.0 32 ............................. GCGGTCCTGGACGCCCTGGTGCATGGGGGCGT 7822 29 100.0 32 ............................. GCCCGCCCAGGCGTAGCCGTAGAGGGTGGCAT 7883 29 100.0 33 ............................. TGCTAGCAGTCCCTACCGCCATGACCTCAGGCT 7945 29 100.0 32 ............................. GCCATTTATGCCCAGAACTCACCTGGGGGCAT 8006 29 100.0 32 ............................. CTCACCGTCTCGGCGCGCCGCCTCCGGGCCGC 8067 29 100.0 33 ............................. GGGAAGCCCCCGGGACCGGTTCCAAGCGTCATA 8129 29 100.0 32 ............................. GGGCGGAGCCGGGAGAGGTCCAGCTGGGGCAC 8190 29 100.0 32 ............................. CCCGTGCCGTGGCCCAGTCGCATCCGAGGCGC 8251 29 96.6 32 ............................A TTGTTCTGTTTTACGCTGAGATGGCGGAACGC 8312 29 100.0 33 ............................. CTGGCCTGGGGGGAGGAGACGGGGGAGAACTAC 8374 29 100.0 33 ............................. TAGTAGGCGGATCGGTCTAGGAAGAAGCCGCTA 8436 29 100.0 32 ............................. GCCGTGGCCCAGCCCTCGGGTAAGGTCCTCCC 8497 29 100.0 32 ............................. GCAGAGGCGACTTCCGGACCCTCTTCCCAGGA 8558 29 100.0 32 ............................. GGGTAAAGCTATTGGCCTAGGTCCCAATAACC 8619 29 100.0 32 ............................. CCGGAGGGCCTTGGCTAGGGCGTGGGCATCGG 8680 29 100.0 32 ............................. GGTGGAGTTCACCGCTGGACCCTGGCCTGGGT 8741 29 100.0 32 ............................. GCCCGGGCCCAGGCCCTGTCCAGGGCCCGGTA 8802 29 96.6 32 ............................T CCAGCTCCCCTGGCCCCCCACTACCGGGAATC 8863 29 100.0 32 ............................. TGGAGCCCTACCCGCATCGCCATTGAGGCCGT 8924 29 100.0 32 ............................. ACCACGTCGTCCACGAGGCGGCGAAAAGCGGC 8985 29 100.0 32 ............................. AGGACGGCAAGAGGACGGAAGGAGGACGGCAT 9046 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.7 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGTATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4922-3545 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELY01000244.1 Thermus scotoductus strain 25_S25 NODE_31_length_16642_cov_64.0827_ID_61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4921 29 96.6 33 ...................A......... GAGGCCACCGTGCTCATACCGTGGCCGCTCCTC 4859 29 100.0 32 ............................. GCGCTGGGCTGAGCTTCTCCCACCGTTCCCCC 4798 29 96.6 32 ............................A GGGGCCACAAGCCCTTGTCCTTGGAAGAGGCC 4737 29 96.6 33 ............................T TCGGCAGCTGAGAGGCTGAGGGTGGGGTGAACC 4675 29 100.0 32 ............................. AGCATCCGCACCGCCGCCGCGAGGACGGGCCC 4614 29 96.6 33 ............................A TAACGGGTGCCGTGGTGTGGGTTCCCCCCGGCA 4552 29 100.0 33 ............................. GGGATCTAAAGGCCGATTGCGGATAGCCTCAGC 4490 29 100.0 32 ............................. CTCTTGCCCGTAGCTATCTGGTGCCGCTCCGA 4429 29 100.0 32 ............................. TGAGCCCACCGGGGCCAGGAGCCCCGTGGCAA 4368 29 100.0 32 ............................. GTGGATGGGTTGCTGCGGGTGGAGGGGGAAGA 4307 29 100.0 32 ............................. TGGCCATCTGGCCTGTGGCCCGGGAGTGGGCC 4246 29 96.6 33 ............................A GTATCGCTGGCGCAATTCAGGGGCTCGTTGTCC 4184 29 100.0 31 ............................. CTCACGGCCATGACCCACAGAGAAGCACGGA 4124 29 100.0 33 ............................. GGCGATGCGCTCACGCACCTCCGGCGGGGCGTC 4062 29 96.6 33 ............................A GAGAGCCACAGCCAGGGAACGGATGGGCTCACG 4000 29 100.0 32 ............................. AGAGCAGGGTCGGGTCCGGCAGTTCCATAGCC 3939 29 100.0 32 ............................. CGGATACACGAGAGGCTGGACCAGCATCAGGA 3878 29 96.6 32 ............................T CCCCCCGGATGGGGAGCCCCGGCCCAATCTCC 3817 29 100.0 32 ............................. ATGGGCGGTAGGCAGACCTTCCGCGTCCTCAT 3756 29 100.0 32 ............................. TCGCCGAAGATGGTGAGGATGCCCTTGGGGAC 3695 29 100.0 32 ............................. TACCCCTCGAGGCCCACGCTGACCCCCGGGGC 3634 29 100.0 32 ............................. AGGCCCGCACCTCGGGGTCCTCCCGCAGAAGC 3573 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.8 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : AGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15070-16290 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELY01000244.1 Thermus scotoductus strain 25_S25 NODE_31_length_16642_cov_64.0827_ID_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15070 29 100.0 32 ............................. GGCGTTGCCGATGCTGAACATAGCTCCTCCTT 15131 29 100.0 32 ............................. CTCCCGGGCCAGGGCCACGATGGCCTCGTCAT 15192 29 100.0 5 ............................. CTGAA Deletion [15226] 15226 29 100.0 32 ............................. TCCTTTTTCCTCAGCGGGCATGGTTCACCTCC 15287 29 100.0 32 ............................. AGCGCCATCGCCCTGCAGATCGCCAGCGCGGT 15348 29 100.0 31 ............................. CATCCCCATCCCCCTCCCTGTGCGCTTCGGG 15408 29 100.0 31 ............................. CTCCAGCCTGGTCCTGGGGTCGTTCAGGTCC 15468 29 100.0 32 ............................. TGGACGCCGGAGCTTGATCAGTTGCGTCTGCA 15529 29 100.0 32 ............................. AACACGGGGACTACACCGACCACGGGGACCAC 15590 29 100.0 32 ............................. GGACCCCGAGCTTGTCCAGGAGCGTACGGATC 15651 29 100.0 33 ............................. GAGGAGGTGCCCGCTTACTCCCAGGCGGTCAAG 15713 29 100.0 32 ............................. GTTTCTCCAGTTTCGGCCAACCAGTTGGTCAT 15774 29 100.0 32 ............................. GCCTCCCAGTCCCATTCACCCACGGCCCCGGC 15835 29 100.0 33 ............................. GGTCTGCCAACATCCGGCTCGCGCTCCCCGGCC 15897 29 100.0 32 ............................. CCGGGCGCGCGAGGAGGCGAACGTGGACCTGA 15958 29 96.6 31 ............................T CTGGTAGGCGAAAGCGGGACCGGGAAGACCC 16018 29 96.6 32 ............................T TACCTGACCGACTCCGGCGGGGACACCCTCAC 16079 29 100.0 32 ............................. CAACCTCCGGACCCTCTTCCCAGGAGCCCGGC 16140 29 100.0 32 ............................. AGGAGACCCTCCGTGGATGGGGGGACGCCACC 16201 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 16262 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.9 31 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTACGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGCCGACATTCCGCACCCCTCTCCCTTGGCCTTAGGATTTTGGGATGGAAACCACACCCAACCTACAGGTGTACGACCTGGGCCACCTGGGTCTGGTGGCCAGCATCGTGGATCAGATAGGACTGGTACAGACCGTAGACCAGTTCGTGGGCCCAAGGCCGGGCGAAAAGGTCTCCACTGGCATGGCCCTCAAGGCCGCCATACTGAACGCCCTGGGCTTCGTCACCTCTCCCCTCTACCTCTTCGGCCACTTCTTCCAGGGCAAGCCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //