Array 1 550972-552527 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAA01000034.1 Escherichia coli strain 23-1BK entry34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 550972 29 100.0 32 ............................. CCAAAGCAAAAGAAGCTGTCGATAATATGCGC 551033 29 100.0 32 ............................. CCTACAGTTGCAATACGCTCACCAGGGCGGCG 551094 29 100.0 32 ............................. AATATACAACGTGCCGTATATTCCGTTCTCTG 551155 29 100.0 32 ............................. TTCAAATTGATACTGTAGCGAGCGTGCGGTTT 551216 29 100.0 32 ............................. CCAGCGTGGTTCGCTCATGGCCTGTCTCCATA 551277 29 100.0 32 ............................. GCGTCTATCAATTGACGCGCGGACGCTACGCC 551338 29 100.0 33 ............................. GTCTATTTGTCGTTAATCGGTACTGATACGGCA 551400 29 100.0 32 ............................. TCTCTCCCGCCATTGGTGCACTGGTTGCATCA 551461 29 100.0 32 ............................. GAATCCCAGAAAATGCAGCGCCCCGGCGCGCT 551522 29 100.0 32 ............................. CAGGAGACGGCCAGCCGGAACGGCGGCGGCGT 551583 29 100.0 32 ............................. AATTTGCATCACGTAGGGGCGGGGCTCAGTGA 551644 29 100.0 32 ............................. ACGGCACGCGTTACGCACCCGGACAGCCAATC 551705 29 100.0 32 ............................. GAACCGCATCAGCGGAAACCGACAACGGGAAG 551766 29 100.0 32 ............................. AATTCAGCAAAATTCGTGACTGACTCGATACA 551827 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 551888 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 551949 29 100.0 32 ............................. GCCAGCGTCCTGAAAACACCCTCAGCGTGCAT 552010 29 100.0 32 ............................. TCGTGAGCAATTTTCGCTGGATCAACAGGGAA 552071 29 100.0 33 ............................. GCAGCCACATCCTGTTTAACTCCATGTATTCGC 552133 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 552194 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 552255 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 552316 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 552377 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 552438 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 552499 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25809-28399 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIAA01000052.1 Escherichia coli strain 23-1BK entry52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25809 29 100.0 32 ............................. CCGGTTCGCGAGGGGATCAATCTTCGCGCAGA 25870 29 100.0 32 ............................. CCCGGACGGCGAAACAGATAACCCCAATCAAC 25931 29 100.0 32 ............................. GGCGTTCATGGGTTAACACTGACCCGGCGGCG 25992 29 100.0 32 ............................. TCGCTATGGCCGGTCGTGTCGCTGATAGCCTC 26053 29 96.6 32 ............................A TTCTCATAAAGACGGGGAACCAGCATAACGCC 26114 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 26175 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 26236 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 26297 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 26358 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 26419 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 26480 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 26541 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 26602 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 26663 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 26724 29 100.0 32 ............................. GGTTATTTATAATCCATTGTTTCCATTACCAG 26785 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 26846 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 26907 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 26968 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 27029 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 27090 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 27151 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 27212 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 27273 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 27334 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 27395 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 27456 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 27517 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 27578 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 27639 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 27700 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 27761 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27822 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 27883 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 27944 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 28005 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 28066 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 28127 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 28188 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 28249 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 28310 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 28371 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //