Array 1 54436-53674 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMG01000027.1 Siminovitchia fortis strain DE0089 NODE_27_length_54507_cov_32.482473, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54435 36 86.1 30 CCAGG............................... ATGCTAGTTTTTCGTTCATCTCTTATCATC 54369 36 100.0 30 .................................... TATACTCATTTACAAATTCAATACCCATAC 54303 36 100.0 30 .................................... GTCAGTTCGTTTGTATTCGTAATATTAATC 54237 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 54171 36 100.0 30 .................................... CTAAGACGAGCGCTAACGTTAAATCTCCGA 54105 36 100.0 30 .................................... ACGTAATTATCAATTTCCCGGAACGTCTGG 54039 36 100.0 30 .................................... TAGAGCTTGGGTTTTACCGCATGATGAAGT 53973 36 100.0 30 .................................... GGCATGAAGATATTCTCGTATTCTACAAAA 53907 36 100.0 30 .................................... TTGGTTGTTTGATTTTAATTCGTTAATAAT 53841 36 100.0 30 .................................... CTTTCCCCGTCCATGTTTTCTTCGGTTTTC 53775 36 100.0 30 .................................... GACTGAATCACATCCCCCAGAGGCATTCCA 53709 36 86.1 0 ..T..........C..G......A......A..... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 97.7 30 ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Left flank : GTTTCCTAAACCTAATTATACCAAAGGCTGGAGCCCTTTTTGTATTTAATAACTAGATTTTACTTTCGTAA # Right flank : GATAACTGTCAATTGGAGTTTCATCTCTTTTTTCTTGGAGGTAAGCTTGCCCCTTCAGTAACTGCTAAAACTGTCAAAAAAACCGTTCCGCCAGCGCACATTTTAATGATAAAATGGAACTAAATACTGGACCATGAGAAAGGGATAATATGGAAAAAGGATTAAAGTACAGCTCTACCATCAAGTCACGACCCTTCTTATACAAGGAGACCAAAATGCTGGCAGAACTGCATTTGAAGGGGTTGAATGAACTCGAATTGAAAGAGAAAGTTATCAGCCAAAATATCTTTCAAGTCAAAACTGAAACCCGCAAAAGAGAAATTGCTTCAGCCATAAAGGCACGTTTAAAAGTGCTGGATGATTACCTCATTAGGAAGCTTTTAACTACTGACATACATACAAGTAAATTGATCGTACTGTACGCTATCCTTAAAACGGACAGGCTGTTTTATGAATTTATGTATGAGGTTTTCAGTGAGAAAATTTCCGGGCGCGATTTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCATATCACATCAAGATTTACAGGGGAATTATGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 89858-88489 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMG01000011.1 Siminovitchia fortis strain DE0089 NODE_11_length_89965_cov_34.298705, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 89857 32 100.0 34 ................................ CGACAGCTTCCGTAACGATTACCGTGTTTTTGAG 89791 32 100.0 33 ................................ TCGACTTGGAGGCGGCGGCTGGCTTCGAATCAA 89726 32 100.0 34 ................................ ACCTGTGACGGTGTTACGCAAGACTTCGATTTGC 89660 32 100.0 36 ................................ TTCCTTCGTTTCTTCCGTTTTTAACGACTCGTCAGT 89592 32 100.0 33 ................................ TACTCGAGCTACTAACGCATTCCACTGTGCTTC 89527 32 100.0 35 ................................ TGCTTGCCGTAGCCTATTCCGTATTTCGACTGCGT 89460 32 100.0 35 ................................ GTCTCGCAAAAGATATATCCGGAAACAAATATGGC 89393 32 100.0 36 ................................ GCTCTACCTATCGACGACCCGAAGAACGCGCATTGT 89325 32 100.0 35 ................................ CGTCTCATACACATAGTGTCAGCATCCCGTCGCAC 89258 32 100.0 35 ................................ TCCGGAAATGCTAACGTATATTCGGACGAGCACCT 89191 32 100.0 34 ................................ CCTCCAGTTCAATGTATTTGATTATGGTCATGCT 89125 32 100.0 34 ................................ AGAAAAATCCCGTTGACCGTATCTTTCGATTGCG 89059 32 100.0 35 ................................ CAGTTCTTCGGCTCCCACTTCATCGAGAATAACCC 88992 32 100.0 35 ................................ ATGATAATTACATCTTGGCTGGCGGCTCAATAGCA 88925 32 100.0 35 ................................ CCAATGGCGGCGGATGAGGTGATCATGGGAATCGG 88858 32 100.0 36 ................................ TTCAATCGACAGGTGCATGTCTTTCCACAGTTTCAT 88790 32 100.0 35 ................................ ACGGAAATCCTGCTTTGCTTTTTCACTCAAATCCC 88723 32 100.0 38 ................................ CAGAATATGAAAAGGCTACTAGAAAAATTTGGGTAATC 88653 32 93.8 35 ..........A......A.............. ATCTGAACGTAGTGGGATATAAAGGCGTGTTTGAC 88586 32 87.5 34 ..........C.A......T.......A.... GGTGTAAAGCCGGAGGTCATCGACGGTGCTTTTT 88520 32 75.0 0 .A....................TA...TTTTA | ========== ====== ====== ====== ================================ ====================================== ================== 21 32 97.9 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : CAAACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAACAGTCGGTCCGTACACAAAGTTTCCTAGC # Right flank : ATCAGTTTTTTTCTAAAATGAATCTTTTCCTCCCCTCACCCAGTATATATGTTTAGAATAATTTTTAAGGGGTGGCTGTAATGGGTATTTTATCAAGGTTTAAAGATATTATGTCGAGCAATATCAATGCATTATTGGACAAGGCGGAGAATCCGGAGAAAATGATCGATCAGTATATGAGAAACCTGAACAGTGATTTGGGCAAGGTGAAAGCTGAAACTGCTTCGGTTATGGCGGAGGAACAGCGGTCAAAACGGGCGCTCAATGAATGTTCGACAGAGATTGAAAAGATGCAGAATTACGCGGTCAAAGCCTTGGAAGCAGGAAATGATGATGATGCACGGAAGTTTTTAGAGAAGAAGGCCTCCCTGGCCGAAAAAGAAGCGGAATTGCAGCAGGCCTATAGTTTGGCAGCTTCCAATGCGGTCCGGATGAGGGAGATGCATGACAAGCTTGTTTCTGATATCGGCGAGCTGGAGGCACGCAGAACGATGATCAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 118-945 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMG01000130.1 Siminovitchia fortis strain DE0089 NODE_130_length_1019_cov_32.409766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 118 36 100.0 30 .................................... AGCACGTTACAACAGACTTCAAAAAGTTTT 184 36 100.0 30 .................................... CTGCTATTTCATCATCGGTAACGCGCTTTT 250 36 100.0 30 .................................... AGTCATTAGTACGCAAATATACGGTAAAAG 316 36 100.0 30 .................................... CGGATTCGCTTCTCCTACGATGTTCTTAGA 382 36 100.0 30 .................................... CTTTCACCTTCCAAACCTACATTAGTAGAC 448 36 100.0 30 .................................... CAGCGGTTAAACTGCCCCTTTATAAATGCT 514 36 100.0 30 .................................... TGCAGGTTTTTAGCGGCCTTTTCACTGGCG 580 36 100.0 30 .................................... CATCTTGCCCCAGAACATCAGTTGCACATA 646 36 100.0 30 .................................... GCGACTTGAATCCGGTCGTTACGGTAGACC 712 36 100.0 30 .................................... GTGATTACCTCGTTGGATAAGCGCATTATA 778 36 100.0 30 .................................... TGATACTGTGTTAGGTGAGGTGGCTGTCGT 844 36 100.0 30 .................................... ACTGACTTTGTTGGGGTAGTTAATAAGACT 910 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AGGGAAGTACAGAAATCACGCTGAAGGAATTTGAATAAAGAAGGCCCTTTTTTGACGGAACAAAGTGATTCTTTACAGTGATATGATAACGAAGGTAACATTTCAACAGTGACGCAAG # Right flank : AAAGAATCACTTTGTTCCGTCAAAAATAGGCCTTCTTTATTCAAATTCCTCCGGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 116-3054 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMG01000063.1 Siminovitchia fortis strain DE0089 NODE_63_length_17665_cov_31.425233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 116 36 100.0 30 .................................... CTGCCGACAATGCTACGGATACCTGCGATA 182 36 100.0 30 .................................... CGGCTTCATGCCCGTTTGCTCGTAATAGGA 248 36 100.0 30 .................................... GGAGGCCCTTTACAATGAAAAAACTACTCT 314 36 100.0 30 .................................... TAGGGAACTTGAGCAATACGAGGCGGAACT 380 36 100.0 30 .................................... ACGATTTCTTTATCGGATTCCCACGGCGGA 446 36 100.0 30 .................................... CATTAATCTTTGCTTTTCTTCCGGTGTTTT 512 36 100.0 30 .................................... AATGCTAGTTATGTAACAACAGGTTTGTTA 578 36 100.0 30 .................................... TTAGGCGGGAAGTTAGCGAGGTCATTAGAG 644 36 100.0 30 .................................... GATAGCCTTTCTCATATTCGTGTTTTTCTG 710 36 100.0 30 .................................... CGGTTTTCAAACGGTACACCGGTGTACCAA 776 36 100.0 30 .................................... CCTCTTGCGAATGTTCATCGGTCCAGTCCT 842 36 100.0 30 .................................... GCAATTATGCTTAACACGGTTAAATTGCGC 908 36 100.0 30 .................................... AAAAAATCCTTCGCAAGATGCTAGAGCTTT 974 36 100.0 30 .................................... GGAAAGAGGATCAGAAGGACAAAAACTGTC 1040 36 100.0 30 .................................... TACTTTAATCGACCAAATCGCGCAGGTAAT 1106 36 100.0 30 .................................... CTTTCGTGGGGTTACAATCTCGCAGAATTA 1172 36 100.0 30 .................................... CGAAGCTAAGACGGTTAGGTGCGCTCATGT 1238 36 100.0 30 .................................... TGGCACGATGTCACATATCACACGATAGAA 1304 36 100.0 30 .................................... ATCATGTTGTATCGTTCTCCATCCGAAACC 1370 36 100.0 30 .................................... GTATAACTCGTTAACTCTTTCGTTGCAATA 1436 36 100.0 30 .................................... AATCAGTCGGAACAAACATCGTAAAAGATG 1502 36 100.0 30 .................................... CTCCTTTAGTTCCTGGAGCATAAAGGTAGG 1568 36 100.0 30 .................................... GCGCGCTTTAAAGAATACCGCCCCGACTAA 1634 36 100.0 30 .................................... CCTCCTTCGGGAAATAGTCCCTTCACCCCT 1700 36 100.0 30 .................................... TAATACGAAGGTGGAAGCGAAAGGATTAGG 1766 36 100.0 30 .................................... ATGCTGGATGAATTCGTGATCACGAAAAAC 1832 36 100.0 30 .................................... AATGTAAAAGGCATCTATTTAACGACTGGG 1898 36 100.0 30 .................................... CCGCTTTTGACACGTGTCGTCCAACCATAA 1964 36 100.0 30 .................................... GGATATTCGATGAAATCCATGAGTACAAGG 2030 36 100.0 30 .................................... TGCGGATTGGCTGAATGGTCTATCATGGAT 2096 36 100.0 30 .................................... AGGCGGATTGGAATATTCCTATTATCGAGT 2162 36 100.0 30 .................................... AATTGCAGGTGGGAAAGCTGGATTGACAGC 2228 36 100.0 30 .................................... ACAAGGGACAGGGAATGGTTTTATGAGGTG 2294 36 100.0 30 .................................... CCAATCCCACAAGGTGCGCCTGCCCTCGTT 2360 36 100.0 30 .................................... TGCAAGATAATCCATATCATAATTTTTTGC 2426 36 100.0 30 .................................... GAAAAAGAAAGTGGATCCACGTGAAGCTGG 2492 36 100.0 30 .................................... GGAACTTTCGGATTGAAGGTAAACCAGCGG 2558 36 100.0 30 .................................... GAAAATAGAATATGGGTATAAACTTTTTAC 2624 36 100.0 30 .................................... CATTCATATCAATAATGATCTCAATGAAAC 2690 36 100.0 30 .................................... AAGAAGAGAAAGAGATTGTCCTACCCAGTG 2756 36 100.0 30 .................................... TTGAGAGCATCCAGGGAGATGATCTTGAAA 2822 36 100.0 30 .................................... TCCAGCAGTGGTATTAAAACAGCGTGGACA 2888 36 100.0 30 .................................... AGAGGATCCGAAGTTCCTATTAGGAAACTG 2954 36 100.0 29 .................................... TTGGTTGCAACGATGTAAACAAAAAGAGG 3019 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 45 36 100.0 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : AACCGGCACACTATTTCAGGTTTTTCACCGGAGTTAATTTGAAATTAGGTGTCTGAAATAATGTGCTAGTTTACAGTGATATGATTAATGCATCCACAATTGCGCTTGGTGATTAG # Right flank : TACATGGCCGCAAAACCCTTGATTCCTCCCCGTTTCAGGGGTTTTGTATTTCCAAAAAAGAAGGATTTATCCCTGGGATTTATCCGCTTTGTTTTATTTTTTATAGAAATAACTGTAAAAAAAATACCTGCAAAATAAATTGCAAGTACTCTTTAAAAGAAATCTACTTTTTTAACACCGAGTTCTTCTTCTGCTGTCGTTGTACCCAATAAAATCTCCATATTGGCAAATTGTTTCTCCGTTATTTTCATTGCTCGGATGGCCCCATTAACAGGGGGGAGATTCTCCTGCAATCTCTTCATATGTTTACGGACCGCATCCTCCCCATTGCAAATTCTTGTGTATACTGAATATTGAAGCATTGTATATCCGTCATTCAATAAAAACTTACGGAAACGAGAGTAGGCTTTTCTTTCCTTCGGAAGTACTACCGGCAAATCAAAGAAAACGATAATCCTCATGTATCTACTCATATGTATGTACGTTTAAATTGGTTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 6168-8668 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMG01000076.1 Siminovitchia fortis strain DE0089 NODE_76_length_8755_cov_33.396520, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 6168 32 100.0 33 ................................ TTTTAATATTTCAACCTTAGTTTCAGTATCCCC 6233 32 100.0 35 ................................ ATTTCATAGAAACTCATACCCGTTGAAGTTATACC 6300 32 100.0 35 ................................ ATGTTAGCGACTTCAGACAACCTACAACCGGTTGA 6367 32 100.0 35 ................................ ACCATCTTGATCACCTCCTCCTGTGTGCAGGAATC 6434 32 100.0 35 ................................ TTGTCTACACCGAGTTTGCCTAGCACCCAGTTAAC 6501 32 100.0 35 ................................ TCAAACTCCTGCTCCATGCCTTCCAGGTCCTTGAT 6568 32 100.0 36 ................................ ACCTTTGAACTCGTTACCTTTTCTTGAACCCTGACC 6636 32 100.0 39 ................................ TTTCTCAAGGACGATCCAATAGGCGCATCCATAATGCCA 6707 32 100.0 36 ................................ ATTAGCAATATATTTTGGCATGATTTTGCCCTCCTT 6775 32 100.0 35 ................................ TACTACTGTCATAACCGCGCCGAACCCCGAAATAA 6842 32 100.0 36 ................................ CTCGTCAGTAAAACGTATTGCGAATACAACTTTATC 6910 32 100.0 34 ................................ ACAAAAATTCACGCAGATCTTATGGAGTACAGCC 6976 32 100.0 34 ................................ AAAATATTGACGAGATGCTTACTTCGAACGGACT 7042 32 100.0 35 ................................ ACCGACACGCTCGCGAAAATTTGGCAGACGGTACG 7109 32 100.0 34 ................................ CTCGCCGAGTGGTCGGTGCCGAAAGTAACCTATC 7175 32 100.0 34 ................................ TTCTAATTCGATAGTAGAGCCGATGGGGTTACGA 7241 32 100.0 35 ................................ AACTCGGCAATCGGGAAGGCAATAAGCCTCCGCAG 7308 32 100.0 34 ................................ TTCGTAATCCCCGTCGTGGAATTTATCGATTGCT 7374 32 100.0 33 ................................ CGTTACATATCGGCGCGAGCTTTCATTCCAAGC 7439 32 100.0 35 ................................ TATCCTTGAAATCTACGAGCCCTACAGAAATATGT 7506 32 100.0 34 ................................ CAAGAAGACGGTGATCCTGTACTTAAGTTTTTAC 7572 32 100.0 34 ................................ ATACTTGAGTTTTCATTGATGGACTTAAGGTAGT 7638 32 100.0 36 ................................ TATACGAGATTGGGCGTGATTTTCGAGAGTGGTTAG 7706 32 100.0 35 ................................ AAGGATGAAATCTACAACTAGAAAGGGGTAAAAGC 7773 32 100.0 36 ................................ CTGGTGTAGTGTAATTTCGAAAAACAGCCCTACCAT 7841 32 100.0 35 ................................ TTTGATTTTCTTGTTGTCATCTTGCAGTTGCTGAA 7908 32 100.0 34 ................................ TCTGACGTAGAGCCCCACCGTCATAAGCCAAACC 7974 32 100.0 36 ................................ CAAACGTTACTATTTCGTCGCCCCACAACACGTCCT 8042 32 100.0 34 ................................ CTTCCGGCTCATATTCGTAAACCGCTCCGATAAG 8108 32 100.0 33 ................................ GCTAATCCTTCGCCAGTCCAGCGTCCGATTTGA 8173 32 100.0 34 ................................ GTTAGAACACTCAATCTATTCAGCCCTTTTAATT 8239 32 100.0 34 ................................ AACCATCATTATTTGGTTAAAGAACTCACTCCCG 8305 32 100.0 34 ................................ TTCGGAAAACTGGAACAACGCCAGTCCGTCGGTT 8371 32 100.0 35 ................................ AATTTCGATGCGTCGAGGCTTTCAAACGGAATCAT 8438 32 100.0 35 ................................ CTTTTCGACATCTACCAAAGAGTCCTCAACTTCGA 8505 32 100.0 34 ................................ ATAGCGCCGTGTATTGCGTGTGACTTCGCGCTTG 8571 32 100.0 34 ................................ ACGTACCGATAATTTAAGTCCTCTGTTAGCTTTT 8637 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 38 32 100.0 35 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TGAATATCCACCATTTTTTTGGAAGTAGGTGAAAGAGTGCTTGTGTTAATAACATATGACGTCAGTACCACTACTCCGGAAGGTAGAAAAAGACTTAGGAAAGTCTCCAAGAAGTGTTTAGATTATGGACAAAGGGTTCAGAATTCCGTATTTGAATGTGTTTTGGATTCTACGCAACTTAAACAATTGAAATATCAATTAGAGGAAATTATTGATAAAGAAACCGATAGCTTAAGATTTTATAACTTGGGGAAAAACTATAAAGGCAAGGTAGATCATATAGGAGCGAAGGAATCTTACGATATAGAAGGAACACTTATTATTTAATTATGGTGCGAATATACAGCTCTCATACTTTTTCGTGGGGATTCGCACCCGAAATATCTTGGATTTGATAACGAATTTCCAGATAACTTCAAATGTATTCCTTTTTATGGGAATAAATAGCGAGTTTATGTGATTATTACCCTTTTTTTGGATAAAAACTCACTGATTTCGCT # Right flank : TCGACAGTCGTGTAAAGAATCACTTTGTTCCGTCAAAAACAGGCCTTCTTTATTCAAATTCCTTCAGCGTGATTTCTGTACTTCCCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 573-74 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEMG01000147.1 Siminovitchia fortis strain DE0089 NODE_147_length_689_cov_32.892157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 572 36 100.0 30 .................................... GAAAAGTTATATGAGGAATTTAAAAAAGAG 506 36 100.0 30 .................................... CATGCTTTGCGGGATTGATGCGGCAACGCT 440 36 100.0 30 .................................... TCTGCAAAGTCTTGGACAGCCGCCTGCAGC 374 36 100.0 31 .................................... CCAACGCGGACAAGCGCCTTTTTAAGTTCAG 307 36 100.0 30 .................................... GGGCACTCCTGCTATCTCCTACTCTCATTA 241 36 100.0 30 .................................... TCGGGGATCCGGATGCTCTTTTAAAATATG 175 36 100.0 30 .................................... GTTTAAAGGGAAGATAGTTACATCTGTCCC 109 36 94.4 0 .................................TG. | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 99.3 30 GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Left flank : TTTAGTACCCAGATTTGTAAATTGTTCCCAAAAGAGCGCTGAATTAGTTTTCGGCAAATTTACTTTCGTAATTTGGGGTGATATGATAATGCTCACGAGTAGAACCTTTTTCTCCA # Right flank : TAAACTAGCACATTATTTCAGACACCTAATTTCAAATTAACTCCGGTGAAAAACCTGAAATAGTGTGCCGGTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCATAATTCCCCTGTAAATCTTGATGTGATATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //