Array 1 172082-174443 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXL01000003.1 Neisseria subflava strain C2011009653 C2011009653_S23_ctg_863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 172082 33 97.0 34 A................................ CAGTTTCCAACCAATACGGGGAAACGTCTAACGC 172149 33 97.0 34 T................................ TCGCATATCTTTTCTGCCATCTCGTCGTTGTATT 172216 33 97.0 34 T................................ CTCAATGGCTAAGCCACCCCTTTTGCCGTCGCCA 172283 33 97.0 33 G................................ GTCGTCATAGTCCATACCGTCGTCAAGCATTGC 172349 33 97.0 34 G................................ AGCCTTAACAAACAAGTTTGGTTATTGCACTGCT 172416 33 97.0 34 T................................ CATTTTGACCATCTCGAGAGATGAAAATTTTTTT 172483 33 97.0 32 T................................ TTCATTGCTTAATCTCTTGTAAAAGTCTAGGG 172548 33 97.0 32 G................................ TAATAAAAGCCGTTTTATTAGTCGGGCATTTA 172613 33 97.0 34 T................................ AGTACGCCGCGTTATGGACTTACCCAACCACCTC 172680 33 100.0 34 ................................. GATATTGAAGATGTATTGCCCAATAATTCGGGGA 172747 33 97.0 35 A................................ GTATACAGGTGTCGGGAATTTGACTGCATAGCTTT 172815 33 100.0 33 ................................. TTCTGATTGTTCGTATGGGTACAGCTTGTCGAG 172881 33 100.0 33 ................................. GATGGAGTTGAATTTGTAACCCACAAAGGATTA 172947 33 100.0 35 ................................. TATTCTCAGACGGCTGAAGGAAGCGTGATTACAGT 173015 33 100.0 33 ................................. CAGTCGATGCGTGAGGGTATGGCGGATGTCGTG 173081 33 97.0 32 T................................ ATTTTTTCTTCCGTACTCATCGACTCGTATTG 173146 33 100.0 35 ................................. GGAGAGAAATCCAAAACACTGGATTCTTGGTCAAC 173214 33 97.0 33 G................................ ACGAGTCCAAACAGTTCTATGCCATTGAAGATA 173280 33 97.0 34 A................................ TCGTGCGGAAGTCTGGGTAGTTGCTGGCGTTGCA 173347 33 97.0 34 A................................ AGACGGCTGGGAAAAGCGTTTATATAAGTTTTTG 173414 33 97.0 35 A................................ AATCTTTTGCCGATACAGCAAAAGTTGGCGATGTA 173482 33 97.0 33 A................................ ATGAATCCGATCAGAATTGAACCTAAACCAACA 173548 33 97.0 34 A................................ ATAAATTGCGTCCATATGAATCAATCAATCAGGA 173615 33 100.0 34 ................................. AGATTATGGACAATGATTATGCTGGCGCGGAAGT 173682 33 97.0 34 G................................ GTCAGGTACTCGAACAGGTGCTGGCTGATATGCT 173749 33 100.0 34 ................................. CTCTCTACTTGCAAGCTGTTGACCGACAGAACCA 173816 33 100.0 33 ................................. ATCGGCTCAGTTGCTGAACCACGCATGTCTGGG 173882 33 97.0 33 T................................ TTGTTGGTTTGGGTGTGTCTCTTGTTTCTTATG 173948 33 97.0 34 A................................ CATGACAACCGCATGGCATTTGAACAGTTCTTTA 174015 33 97.0 33 T................................ AAAAAATCGGAGACAACAGGGCCGAGGATTTCG 174081 33 97.0 34 G................................ TGCATGGCAGAATGCAAATCCTCCAAACAGGCGG 174148 33 100.0 32 ................................. ACGGTCGCGTGCTGGCTTGGGTACCTGCGCAG 174213 33 100.0 33 ................................. GGACTTTTGCAGACCGTACGGATACCGACTGGA 174279 33 97.0 32 G................................ AGGGCATGGTACGGAATCCGACTTAGACTTTT 174344 33 97.0 34 A................................ TATATAATAGGATTCTTATAGCGCGATTTTCGCC 174411 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= =================================== ================== 36 33 97.9 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTATGATATTTCGCTGGAAGACGCGGAAGGGCAGACAAGGCTGCGGCGTGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAATATTCGGTTTTTGAATGCGACATTGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCATGGCGCAAAACCGGCGTTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGAATTGTTCTTTAACAATCAGGATATTGCAAATGCGGGTGTAACGGACAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCCTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : CAAAGTAAGGCATTTAGTGGCACAAGGTCGTCTAAACCAGCCAGCTGGGTGTTGAAACTCTGCCACCGTATCTCATGTCTGAGTAGGGAAGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTTCGAAGCTTTAGTGAAAGCTGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATTAATAAAAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTAATTTACTACGCCCATTCCGCCCAAGACAAACTCGGCAATCTCTTACCTTACGAACATTGGCAAACCTTGCAAAGCCATTCGGTCAATGTTGGGGAAATGGCGGCGGAGTTTGCTCGGGTATTCGGGGCGCAGGAAATTGCCTGCCATACTGGACAGCTTCATGACTTA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 59466-60019 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXL01000008.1 Neisseria subflava strain C2011009653 C2011009653_S23_ctg_873, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59466 35 80.6 19 T......-A......A.....G.....A.T...... CCGCCTCGTGTCAATAACT GA [59469] Deletion [59520] 59522 36 100.0 30 .................................... CTGCTTACCGGCTGAACGGCACTGTTACAC 59588 36 100.0 30 .................................... TGATTTGAGAGAGTAGGCTCAAATAATCCT 59654 36 100.0 30 .................................... GTCTGAAACAGGCGCAGCTTGCCCTGTTGG 59720 36 100.0 30 .................................... GTCGATTTGCGTTGCATACACCCTACACTG 59786 36 100.0 30 .................................... GTCCCGGTCTGTTTCCGATTTGGTCTTTGA 59852 36 100.0 30 .................................... ACGCCGTGTGAATGCGCCCACACCCCATAG 59918 36 100.0 30 .................................... AATCTTGTAACCCATCGGCAGGAAACCGTA 59984 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 29 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCTAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATATTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : TACCTCAACGGGAAATCCTTATCATGTAAGGGTTTCCCGTTTTATTTTGTCTAAAAAAATGAGCTTAAAATAATAATAGTTGGTCGGAATTTACTCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTACCGCTGTGGTTACCGGTAGGTCGAAGAAGACGATTATCCTCATAAATTTAGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGTAGTTTCAGCTGTTTGGCGTTTTTGTCGGTTACGCTGGCTTGAAATGAAGAAATCATTTTGTCGATGGCAGCTAAGGT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //