Array 1 600-328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQZ01000040.1 Leptospira borgpetersenii strain 56670 Contig040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 599 29 100.0 32 ............................. CATTCATTATGCAGAATTCTAAATTGATTTCA 538 29 100.0 32 ............................. CGGGCCGTGACCACCGCCATTTATCTTCGTAT 477 29 100.0 32 ............................. GTGGCTCCTGGAAGGATAGAGTCGAATTTGCT 416 29 100.0 32 ............................. AGTAGAATCAAAAACCATCCTTTCATCGTTTA 355 28 72.4 0 ...............A.AACC..-.C..A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CGATAAGGTTTGGTTCGGGGAATTGGAAATCCGGGGAAAATCAACCCGACGAATCTGGAAAGAAAACATCCAAGTTATGATCGAAGTCCTTGGACATGTTTCAATACATCCATCAAGGAAAACATAGATCTAAGGAACCTGATTCAGAAAGGAGATCGTCCCCATAAGTTTTAAATTTATAGATCGAAGGATAAATCTATTCCGTTTTTTTAGGACATTCAATTCATCTAATTCCGATATACATAATATTATGTTAAACAATTTCTCTCTTTCTGAACAAGATCGTTCCCAATCCTTTCAAAATATTCGGTCTCTTTCTTTGGTTCCGAAATTCGTTTTCACGACGATTTGTTTCGCGAGATACTAGATTTTGAAGGTTCCTTCGATTTTTCTCTTACAAACCGAATCGTTTTTGTGAACAAAAATACAAAACCAGATCATATCTTTAAAAATAACTCTAAGCTGACATAATATGTAAAATTACTATATAAATTTTTAGC # Right flank : ACAAGTTGAAGAGGACTCTAGAATCAAAAGGATCCAAACGCACATTTTTCAAGTGTTCCGACATGAATGAGGCTTTTTACTTGCAAGAAGTATGATTTTCTGATAGTGGAAAGTCCTCCAAGCCTTTCCTCCTCCCAAAATTAGGGAAAACTCATGCAACGCTCTCTATAAATCACTTGCAGGTGTAAGTTTTACGGTGGATCTGTCGGAATTCCGACAGATTTATATTAGAGTTGTTGAAAAATTAATTCTCTGTCCGTTTCTGCTTCGTTGAAATGGATGTTTGAAGCGGTTTTGTTAATCCGAATCATGGAATTTTTCAACAACT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14405-14860 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQZ01000048.1 Leptospira borgpetersenii strain 56670 Contig048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14405 29 100.0 32 ............................. GGCGGCGTCGGGAAAACTTGCACCGCTACTGG 14466 29 100.0 32 ............................. TCACACCGCATGGGCGCACAAAGATGCGCTCA 14527 29 96.6 32 ..A.......................... AGTTAATAGAGATGACTCATTCCCATCGAGTA 14588 29 96.6 32 ..A.......................... TTCAGTCGCGCCCTTTAAATGACGAGGAGCTG 14649 29 100.0 32 ............................. CTAAGGTAATCCTATGAATCAAACCTTGGAGA 14710 29 100.0 32 ............................. ATGCCGTGCTGGTTGCGGTTGAGTCGAGAGTA 14771 29 93.1 32 T......................A..... TGGTGGTGGAATAATCGTATGCAATCTGATTA 14832 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAACGAATTATTCCGGATATCAAGGAGTTGATCTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAATTGAAGCCGGGCGTTTTTGTAGCTTCCATTAATGCGAGAGTTCGAGATCGAATCTGGAAAAAAATTTCCGAAGAATGGAAATCCGACGCGATCATGTTGTTTTCGAGCAACTCGGAACAGGGTTACGGCATCCGTTCTCACGGCGATCCTTCCCGCGAGATTATGGATTTCGACGGTTTACTTCTCATGTCCAAACCCGATCCGAAACGCGATCAGATAGAAGTCATGAATGGTTCCGATTTTTCTATAACCACCGAAGACGAAGTTTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCGAACTCCCTTCTTTTAGAAGCAGATGTTCCTGATGAATCTTAGAATCAGACATAATTCTGAAGATTCCTATACAAACTTTTAGC # Right flank : CGAAAAAATAAAGGAACAGAACAAACGTAGGGCGCGTCCAAAACCAAATTCTGCTTTATCAGAAAGATCATTTCTTCAAAGATTTCTGGAGTCGTTTTAAACTTTGATATAGATTTTCCTTTTATCTAAGAAACTTAAAATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAATAACGATGCAAGATACGGATCTGCAAATAAAACAAGTTTAGAAAAAAACCAAACTTTGACGCCGACCGATTTTCCATTCTCCAACACGATCGTCCAAAAATTGAGAGTTCTCGCAAGAATTCCGGAACCTACAAAGACTAAAATCGCATTTTTACCGAATACAAAAAACGGTTGAAAAAAGATTTTCAAATCCAAACCGTTCCACTTTTTCAAAAGAATTAAAGAATCTAAATATTCAAAAAATCCTATGCACAAAAAAGCAAAACCTGTCGTATATACCGCGTAACTTCCGGTCCAAAGACTTTTATTCATCGGTAAACTTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26610-26881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQZ01000095.1 Leptospira borgpetersenii strain 56670 Contig095, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26610 29 100.0 32 ............................. GACCACCTGTTGGACCACCGATGTTGATCTTG 26671 29 100.0 32 ............................. TAGTAGGCGAATCCAGTTATGAAGATTGTATT 26732 29 100.0 32 ............................. TCGCCAATTCGTCTCGGTAAAAATTATTAAAC 26793 29 100.0 32 ............................. TTTGATACAGGAGAAAACTTCACATATAACCT 26854 28 86.2 0 .....................-....TGT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCCCGAATAATTGCGATCTCTTGTTTCGTTCGATGTGTCAATGTGATTTTTAGCCCGGTTCCGCATTTTTCAATGAAAATTGATTTATAGATAGGAAAGACACTCAATAGTTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCCTGGGAGAACAATTCTGGTGAAATATTTTAGATAATCCTCTTAGAGGTTTTTCACACTTTCAGTCGGTATTTAATATGGGCATCTTACTTTTACTCTTTCTAATTTTGTTTTTAGTTACTTCCCTTTTTTCAGCAGAAAAAGTAAGCGTACCTTAGATGTTAACGCTAGTGGCAATCTTCAAACACAGGGTTCCGCGCCGTATATCAGCGGGACTTGATTACGGATAAGTTTCCTGAGAAGCATATGTTTTTAGTAAGGCGATTTGTCATCATAGATTGACTCGAACACAAAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGTTTTTAGC # Right flank : TACGTAAGATCCATAAACACCAAAATGAGGTACGTAATTGTGGAACTCCCACGTTCAGAAGACCGACAACAGTGTTGCTACGATTGATCAGACTGACATTCGCGTGTTGTTTTGGTATACCGCAAATAGGAGTTGTTCTTAGTCTTAAAACAACTCAGCACAACGCTTCCTATGAAGCGCGTTTTGTGAATCAAATCTGCAAAGCGGGCTACTTCAACACTGAACTAAAAAGTATTCCTTCTTTATCGTACATCTTCTCTAACGAAATAAATTATCTGATGAAATATTATTTTAACTTCGAGTTACCAGATTCGTCACCGCCCAAAGAAATCCGGATAACTCTCTGGAAATTGAGGTGATCATTAACTGAGGAATTTTTCCTCTTAACTGTAGATTACGAAACTTCTTGTGTAACCTGAGAGAAGCTTTTTCCGCTAAAGAAACGACTAACGCAAGTCATCCCGATCTTCATGCAGTTACAATTTTACTTCCTGTTTCAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //