Array 1 65072-62159 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGY01000003.1 Moraxella catarrhalis strain COPD_M85 NODE_3_length_349553_cov_28.7762, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 65071 28 100.0 33 ............................ CCCCAACATCCGAGGCGGTAGTATCAGCATCGG 65010 28 100.0 32 ............................ ATAGCTCACCCAATCAAATTCACCACGCCAAA 64950 28 100.0 32 ............................ CAAGGCTATCAGCGGTCGCACCGTATTGACTT 64890 28 100.0 32 ............................ ACGGTGGCTCAGGGCAATCCTGTACCGATTTT 64830 28 100.0 33 ............................ CTTTGTGTTCATCAAGAAAGGTTTTGATGGGCA 64769 28 100.0 32 ............................ CTGACCAGTCCATACGCTGATTGTTAATGCCG 64709 28 100.0 32 ............................ GCATGGACAAACCAAAAAATATGTCTGTGAAA 64649 28 100.0 32 ............................ AAATCAAGCCAGATGCTCGCTTTGTGTCTTTA 64589 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 64529 28 100.0 32 ............................ GTTATGTTTAAAATCGCTGTGTTATCATCTTT 64469 28 100.0 32 ............................ ATATCTGCCAGCCCCTCAGGGAAACCCTTGGC 64409 28 100.0 32 ............................ AATACCCATCCTGCCACCACTTGTATCCAGCC 64349 28 100.0 32 ............................ TATTTTTTTCCAACTGCTTGAGCGGTTTATCC 64289 28 100.0 33 ............................ CTTGATTTGGCGGGGTGCTGGTGGGCGTAAGCT 64228 28 100.0 32 ............................ TGATATCGTACCGCTGCCTATCAAGTCACCGT 64168 28 100.0 32 ............................ CCAGTTAGCACAACTGGGGCAATTTATATTAA 64108 28 100.0 32 ............................ TAAAATTTCACGCACAGGCTGATAAAGATTTA 64048 28 100.0 32 ............................ GAGCAAATACGCAAATTACCGCTCCGAATATC 63988 28 100.0 32 ............................ ATTTTCACGGTTCTGCTGACGCAACACTCCCC 63928 28 100.0 32 ............................ CAGTTGCATGGGAAGCGTTAACCAAGACTAAA 63868 28 100.0 33 ............................ CCGCTCCCCAACCCCACCGAGTGAACAGGTATG 63807 28 100.0 32 ............................ TATTAGATAGCTGTACAATACCTGCATTATTT 63747 28 100.0 32 ............................ ATGCTGTTATCGCGCTCATCTTTGGGCAAAGA 63687 28 100.0 32 ............................ GTCAAATCTTTTTGAGCTGATTAAACTTCAAA 63627 28 100.0 32 ............................ ACTATTTATAATAAGATTTCTGCCCCCAGCGG 63567 28 100.0 32 ............................ GCTAACAGAGCTTTCAACTGTGTTAATGCGTA 63507 28 100.0 32 ............................ CTTGATGTCAAAATTCCCTTTGGAATCTTTAA 63447 28 100.0 32 ............................ TTTGTCTTGATAAAAATTAAATTCTTGTTTAC 63387 28 100.0 32 ............................ ATACACACACACTTTAATACCATTTTTGGCGG 63327 28 100.0 32 ............................ CGACCAAAAGGGGTCGGTACTCTTTCTTCGTT 63267 28 100.0 32 ............................ GCTGTTTTGATTACCGAAGCCAAGCAGCGGCA 63207 28 100.0 32 ............................ AGTAAATCAAAAACAATAGCCGAGAAAATACT 63147 28 100.0 32 ............................ TTCTCTTCACTTGGGTGGTCGCATTTTTGCAA 63087 28 100.0 32 ............................ AAGTTAGAGCGTGGCAACATTGCAACAGATTG 63027 28 100.0 32 ............................ GCACAGCTTGCAAATAAAGCAAGCACGGCAAC 62967 28 100.0 32 ............................ AGAGCTGACCGCCCATTGGGTTTTTAGCACAT 62907 28 100.0 32 ............................ TAAAGGTGTTGGCAATGTTACTTATCATAAAT 62847 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 62787 28 100.0 32 ............................ TACAACACTCACAGGCTATGGTATTGGTAATG 62727 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 62667 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 62607 28 100.0 32 ............................ CGTAGCATTCAACGCATCAATCGTATTTTTGA 62547 28 100.0 32 ............................ TTTGCCATAAATCTCACGCACGGACTGCCGTC 62487 28 96.4 92 .........................C.. CGCCACTTGGGCAGTGGGTGGCTGAATCATGGTAATTATTTGGCGTATGGTTTGTAGAAACGCCACTTGGGCAGTGGGTGGCTTGGCTTGTT 62367 28 100.0 32 ............................ GCTTTGGCGGTTTTATTCGGCTCACTTGGCGT 62307 28 100.0 33 ............................ AACCGCTTTAAATGCAACAGATAAGGCATCTGT 62246 28 96.4 32 .....T...................... TGGGGAAGTTAGGCATTTAAAATGGCAGGATA 62186 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 48 28 99.8 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGACGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //