Array 1 236752-231637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051298.1 Alicycliphilus denitrificans strain DP3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 236751 36 100.0 30 .................................... CGCGGCACGCGAGGCCATGAAGGCCGCGCA 236685 36 100.0 30 .................................... CCACAGGGCTCATGTCAATCATCATCCCCT 236619 36 100.0 30 .................................... CAGGTCACACCGTAGGATCTGCTTGCGCAT 236553 36 100.0 30 .................................... CAGCCGACGTCTGTCGGCACGTGTGGCCTT 236487 36 100.0 30 .................................... GGAGCACACATGGCCCTCTATCTCGCACCC 236421 36 100.0 30 .................................... CATGGCCACCTGGCGCCTGCACCTGGCCTA 236355 36 100.0 30 .................................... CTGCCGGGCTGGCGGGTCAACAGCTCGGCC 236289 36 100.0 31 .................................... TCAGGCTCAAGCGCAAGGAAACACCGCTCTA 236222 36 100.0 30 .................................... GGGCGGCCGTGGCACACGCCGAGCTCGTGG 236156 36 100.0 30 .................................... CGATTTCCGCCGCCATCGCCTTTTGCGATG 236090 36 100.0 30 .................................... GCGACGAGAGCGCCTCTGCGTCCTGGCGGT 236024 36 100.0 30 .................................... GGCAGCAGAGCAGACCAAGAAGGATGAGCA 235958 36 100.0 30 .................................... GCAACCCGCATCCGCCATTGACCTTTTGGC 235892 36 100.0 30 .................................... GAGTAGAAGGTCATTGCAGCGCCCTCGCTC 235826 36 100.0 30 .................................... ACCCCGTTGGAACACTGATGCTCGAGAGCA 235760 36 100.0 30 .................................... CCAGCCGGGCGGCGGGTTCACGCTGGCGCA 235694 36 100.0 30 .................................... GCAAACCCTTTCCATTGAGCGCCGCCCATT 235628 36 100.0 30 .................................... TCGACCGCGCGATCTACCAGAAGTACCTGC 235562 36 100.0 30 .................................... TGTGTAAGCACCAAAGTGCTTCACAAATGT 235496 36 100.0 30 .................................... CGGCGCGCCATCCCAGAGGGGCGAACGCGA 235430 36 100.0 29 .................................... TTGCGTAGCCGACGTGTAGAGGGTTGCGA 235365 36 100.0 30 .................................... CCTGCCCGCGCGCGTGCACATTACCGTTGA 235299 36 100.0 30 .................................... CATCTACGCCGAGACGTACATCAAAGCCCC 235233 36 100.0 30 .................................... CCCGCCGCGCGGCTCGTGCAGCAGCCTCTA 235167 36 100.0 30 .................................... GGACAGCACCTGGGGCATATCGTGCTCAGC 235101 36 100.0 29 .................................... TTTGCGGCGGAAGGGCGGGCGCGGCAAGG 235036 36 100.0 30 .................................... CGCCGACGATTGCGGTTTGGATTTCACTCA 234970 36 100.0 30 .................................... TTCCGGCGCTGTGGGCAGCTCATCCCACAC 234904 36 100.0 30 .................................... TCGCCCCATCGTTCCACGTGCCGGACATCC 234838 36 100.0 30 .................................... ACATCTAATTTGCATGCAAACAACACGTTG 234772 36 100.0 30 .................................... CGAGCGGGTTTTGTATGGCGTTGCCGCTGA 234706 36 100.0 30 .................................... GATCGCCGAGGGTGACGACCCCGTGGTCAT 234640 36 100.0 30 .................................... TCAATCGTTGAATCGTCACGTTCAGGGCGT 234574 36 100.0 30 .................................... GCTGTTCCGCGCCAATCAGATTGACGTGGA 234508 36 100.0 30 .................................... GGACAACGATCAAGGCCCAGCAGCAGGGCG 234442 36 100.0 30 .................................... GGGCCTCTAAATTGACCACACAACGCGCGA 234376 36 100.0 30 .................................... AAGATCGTCATCAAGCACCGCTACACGTAT 234310 36 100.0 30 .................................... ACGGCGACGATTGCTTGCTACTACGAAAGC 234244 36 100.0 29 .................................... GTGGAAGCGGGTAGCCGGTCAAGGCTGAA 234179 36 100.0 30 .................................... ACGCTCTCGCATCGCTAGCAATCTGTCGTA 234113 36 100.0 30 .................................... TCACTTCGTTAAGTACAACCGTGGCCTGCT 234047 36 100.0 30 .................................... CAATACCTGATTCATACGCCTGCGGCCTCA 233981 36 100.0 30 .................................... AAAGATGATGAGCGGCGCGGAATTCAAAGA 233915 36 100.0 30 .................................... CTGAACCCGTCGCATGAACCGATCCGGGAG 233849 36 100.0 30 .................................... CCAAGAGCTCGTGGGGCGGCGGTGGATACA 233783 36 100.0 30 .................................... GACAACACCGTAGCGGACAAGCGCAACGCA 233717 36 100.0 30 .................................... CCGACAGGGTAGAACAGCGCGGCGCCCTGC 233651 36 100.0 30 .................................... TGCCGAAGGGAACATCAAAGAGCAGAAGAC 233585 36 100.0 30 .................................... ACGGGTGCCATCCGGCACCACGCGGCTGTG 233519 36 100.0 30 .................................... TATCCGTTACGACCAGAGAAACAAGCGCTG 233453 36 100.0 30 .................................... CCCTCGTCTGAACAGCGGGGCGCCATTGGA 233387 36 100.0 30 .................................... GTTGATGGCGAGCTTTTCGGACTCGCTGTA 233321 36 100.0 30 .................................... AAAGTCACCGATCACCTAGCAATGGGTGGT 233255 36 100.0 30 .................................... CCAGGGCCGCGCCTTCGTTCCAACCCTGGG 233189 36 100.0 30 .................................... GGCGGCGGGTTTGGGCGTTGATGCGGTTCA 233123 36 100.0 30 .................................... CAGGCGCCTTGACAGTGTGCCAGCGTGCCG 233057 36 100.0 30 .................................... GCCGTGCGGGTCAATTGGGCACGCCTGCAC 232991 36 100.0 30 .................................... CATGGCGTGATTCAAGCATTTGGCTAGACA 232925 36 100.0 30 .................................... TGATGCACAAATGAAAAAACCGCCACGAGG 232859 36 100.0 30 .................................... GCAAATCGGCATCGGCATCGCGGGCCTGGC 232793 36 100.0 30 .................................... AGCGCCGCGCGAAACGCGCAACTACTACAG 232727 36 100.0 30 .................................... CCATCAGCGGGGACACTCCGCCTGCGCCGA 232661 36 100.0 30 .................................... TGCGCCTCGGTCCCGGCCTTGGCGTAGGCC 232595 36 100.0 30 .................................... ACTTGAGCAAGTCGATCGAAAAGGTCACTG 232529 36 100.0 30 .................................... CCCACCGAGCACCTACCGCGCCCGCTTCTT 232463 36 100.0 30 .................................... CCTCTCGTTTGCCGGCAAGCCCAGCGGGCA 232397 36 100.0 30 .................................... AATCGGGCGAGCCGTAGTACATCGTCATCG 232331 36 100.0 30 .................................... CGAGGGCAGCGTGCAGCGCGGGGATGTACA 232265 36 100.0 30 .................................... CAAGACGACGGCGGCTGGGTCAAGCACACC 232199 36 100.0 30 .................................... TCATTTCGTACTCCTTAGAAAGAAGCAATA 232133 36 100.0 30 .................................... ACTGGCCAATCGCGTTCAGGAGTCGCTGGG 232067 36 100.0 30 .................................... CCTGCGCCAGATCGGTGGTCAGCGTGTGAT 232001 36 100.0 30 .................................... CACCATCAAAGAAATAGGCAAATACGTAGG 231935 36 100.0 30 .................................... TGTCGGGCGCCTCGTTGTTCAGGAACCTCA 231869 36 100.0 29 .................................... CTTGCCGACCTCATCCGCCGCCCCGTTCA 231804 36 100.0 30 .................................... CGCCGACGATTGCTGTTTGTATTTCACTCA 231738 36 100.0 30 .................................... CTGGCACCGTGTACAGGATGCACTTCACGC 231672 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 78 36 100.0 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Left flank : TGCTCAAGGCCCTGGGTTACCGCGAACATATCCAGCGCAAGGCCCAGCGTGGCAAGCCGTTGAGCGAGTGCCAAAAGAAACGCAACACCCGCATTGCCCGCACCCGTGCGCGGGTGGAACACCCCTTTGCGCAGATACAGCACATGGGCGGCAAGCTCATCCGCACCATTGGACAGGCCAGGGCGACGGCAGCCATGACCATGATGGCCACTTGCTACAACCTCAAGCGCCTGGCCGGTTTCCTCAAGGACGGGGTGGATGCGTTCTACAAGGCGGCCACCAGCCCATCAAAGAGCGAGACACGCCTGAAAACGGCGAATGCGTGAGGAGCGGGGGAAAAATGGATGAAAACGCCCAAAACACGCCGGATTTGCCTAAAAAATAGGCATTGCTAAACGCGAGCTCGGTTGCGCGCATCATCGGCGCGGAAATCGTGGGTTTTTAGAGGTGCCCCCCAGTGATCTAGAATCCTGTGGGGGCGGCGAGACTACAACCAGCAG # Right flank : GAGATCGCGCTAACCCCTTGATTTTTCAAGGGGTTTTGTGCTTCTAGGCACCAGAAAATAGGTTGCATGGTCAGAAAAGATCGAACTGATCGGGTGCTTTTTGGCCTGGTTGGCGACGCTGGCCATGGAAGGTGATGGCACGTTCGTACTGCTTGTCTGTGAATTGGAAGATATGGACTTTTCCGCCTGGCGGCAAGGCCGTTTCCACGTTGCGACACAGGGTGTCCACCTGTGTTTGGCTGGTACAGAACCGCATGTAGACGCTGAACTGGCTCATCTCGAAGCCCAAGTCCAGCAATGCGTTGCGAAAGCCCGTGGCCGCGCGCCGCTCAGACTTTTCCACCACGGGCAAATCGAACATCACCACCATCCACATGAGCCGGTATCCGGAAAGCATGCCTCTAACAGGTCGTTTGAATCAGTCCGACTCGGAACTTCCCGCCAAGGCCAAAGGCAAACCCTGTAGAGGTAAATCGAGTTTCGTGCGCTCGCCTAAGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 238845-238080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051298.1 Alicycliphilus denitrificans strain DP3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 238844 36 86.1 30 T...AAAT............................ GGACGCCATCGGCAAGGGCTACGCCTGCCT 238778 36 100.0 30 .................................... GCAGGAAGGCATTGGCACGCTCCCACGTGT 238712 36 100.0 30 .................................... TCATCAATGCTGGATTGGTGGTGCTCTATG 238646 36 100.0 30 .................................... TTCCAGGGCCTTCTTCCATGCGGCCTGGGT 238580 36 100.0 30 .................................... CAGCTCGTCGCGGGCTTGCAGGCGATGAAA 238514 36 100.0 30 .................................... GCGCAGCTCTTCGGCCTGCACCGTGCCCTT 238448 36 100.0 30 .................................... TATGTCTGGCACGGGCGAACGGCCGGACAT 238382 36 100.0 30 .................................... TGATCAGAAAGGGAGATGATATTGTTCCAG 238316 36 100.0 30 .................................... GGTGGGTTGACGCATTTCAAGCGGGATGCT 238250 36 100.0 30 .................................... CAAGCTCAATCCGACCGAAGGCGATACCCA 238184 36 100.0 30 .................................... TCGCCGGGCGTGCGAGTCACAGTCAGCCAG 238118 36 91.7 0 .........................G......A..A | CCA [238087] ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.1 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Left flank : GCCGACCCCCTGGCCCGCCTGCGCGAGCTCTACCGCGACCGCGACCCGCTGTACCGCGAGACCGCGCGCTACGTCATAGAGACCGGCCGGCCCACGGTGAACACGCTGGTCAACATGGCCATGATGCAGTTGGAGATGGCACCCGGCAAGCCAGACCTCAACACGTGAGGTACTTTCCGGCATATATCTGCCGCGCTGTGCCCAATGTGCGCCAGCGCCAGTTCCACAGGCACGATCAAGATACGGCAAATATGCATCTCACAGGCGTGCTGCAGTGCCTGCCGGTGGCGACCACACTGGCGCGCGTGGGAAAGTCGTGTATGTGAATGGGTCCGACAATGCAAGGTTCATCGCACAGCCTTTGGAAATTTCAGTAAATATATTTACAACCTATAATTTTAACAATCATACCCTCAATACCAACACCATCCCCAGGCGAATAAACCGCAAATATTTGAATCATTCAACTCCCTATTCACAGCTCGACATAGATCCAAACC # Right flank : CCCCCCATAGTTGTCCTCATTGCCACCCAACAGGCCCGACAATTCCCCTCATGAACCAACCTTGCACGCGCAGCGCCGTCAAGTTCGACCTGTTCGCCGACCAGGCACGCCAACGCAAGATCGAGGCGCTGGGCGACCCGTTGCAGGTCATCGCCAAACACATCGACTTTGACCACCTGGCGGGCGTCATTGATGGCCTGTGTCCCCGGGCCGACACCCGCAAGGGTGGGCGCCCGCCATACCCCACCGCGGTCATGGTGCGCATCCTGGTGCTTAAGTACCTCAACGACCTGTCGGACGAACAGGTGGAGTACCAACTGCTCGATCGCATGAGCTTCCAACGCTTTTGCCTGCTCTCTGACAGCGCCAACGTACCCGATCGCAACACCATCTGGCACTACCAGCAGCGCCTGGGCGTTGATGGCACGACGGCGCTGTTTCAGGCCACAGACGCGCAGCTGCTGCGCCATGGCTACATCGCCCGCCGCGGGCAGATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //