Array 1 24103-25184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063966.1 Clostridium botulinum strain BKT2873 plasmid p1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 24103 30 100.0 36 .............................. ATTTATTATGAATTATGATTATGAACCAATAACATA 24169 30 100.0 36 .............................. AACTTCTTTGATAATACAGATAATGAAGCAAGTGAA 24235 30 100.0 37 .............................. TTATTTAAGTATTGGCTAAAGTACACCGCTAATATTC 24302 30 100.0 36 .............................. GAGTAACAAAAGCTCACAAGGAGCTTTTAAACAAGA 24368 30 100.0 34 .............................. CTTGCAGAGAATATGTAAATAAAGTGTTAGATGA 24432 30 100.0 35 .............................. CATTATGATTAATAGTATTTTATCTAAAAAGGATA 24497 30 100.0 36 .............................. TTAAAATATACAATATCTTCACAGAGCATGGAAGCC 24563 30 100.0 36 .............................. TACCGCATGTAAAAACATGTTCATCAGTTTTGATTT 24629 30 100.0 35 .............................. GTTTCTTTGTTATATAGACATGCCCAACCAAAGTC 24694 30 100.0 36 .............................. AAATACTAAGCAACTTTATTAAATTTGCTAAAGAGT 24760 30 100.0 37 .............................. AAAATAGTTTTTGCATTACACAGACATTCCTTAATTA 24827 30 100.0 35 .............................. TTCTTAAATTTTCAAACATTTGTTTACTATCATTC 24892 30 100.0 34 .............................. TAATCAGCAACCAACTTTTTAAATTCTGTTAATG 24956 30 100.0 37 .............................. GTTGAACAAGAAAGTTTAACTCTTCTTAACCCTTTCC 25023 30 100.0 37 .............................. TACCTATTTTGCTATTAGACATATTTATTGCACTTAC 25090 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 25155 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.4 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : ATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAATGATATGCATTGATATCTGATGGGAATAGGTTAGAAAATTACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTGTTGTAGAGAATAAGGCCTTAAATTATCCATTTTATATTTATGATGCGAACAATTTACATAAAATTAATGATAATGTTTTACATATGATATATAATTAGATAAAAGTAAATGATCTTTTCCCAACCGATTTTATATAGAAAAGTTGGTGGGATATAGACTATATAAGGGTTCACGTAAGGTTTGAATAATATAAAAATATTTATTAATATTTATTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CCGCAAAGTTAAAGATTACTGTATTTATATATAAATAACTACTTCATAGTAAGGTAGTTATTTTTGTTATGCGTAAAAATAGATTGGTTGTTAATTAAAATCAAGCAGATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATTTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGTACTGTGGCAGGTCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACATATTAATCCTCCTTATATGTATATTATAAACCATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTCTTATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTGAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAGTTATGGAAGTTAAAACAATTTATCTAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 32102-33280 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063966.1 Clostridium botulinum strain BKT2873 plasmid p1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 32102 30 100.0 36 .............................. TCCTTTACTTTCTAATTTAGTTTTTTATAAAAATCA 32168 30 100.0 35 .............................. CAAGATAATTTAATGGGTTATAGTTGTATAAACAA 32233 30 100.0 36 .............................. ACAAATATTAAACGTAAAGGATTGAGTTAGCCCTCT 32299 30 100.0 36 .............................. TCAAAAACAGTACTTAATCCGGATTTTTCTATAATT 32365 30 100.0 36 .............................. ACAATTGATGTTAAATCTTGAGCATTAATTGCATTT 32431 30 100.0 37 .............................. ATATATAAAAAAAAGTCAATTAGGCAACACCATCTCA 32498 30 96.7 36 .......................C...... ACAATTTATATTATTGCTAAAGAAGGTGCTAATATG 32564 30 100.0 35 .............................. TGTTATAATATTTGTATCAATAAAAATATAATGAA 32629 30 100.0 34 .............................. ACCTTATTCCCCAGCAACTTTTTAATCTTATCTT 32693 30 100.0 36 .............................. GATAGTCTTACTCACCAATATATTAAAAGAGCTTGA 32759 30 100.0 37 .............................. GATTTGAATAATTCAAATGTGAATCAGATAGTTTTAC 32826 30 100.0 36 .............................. AAACAGTACTTGCATTAACTTTTTTATATGTAGTGT 32892 30 100.0 36 .............................. TATTTTACCTCCAAATTTTTAATTTACATTAATATA 32958 30 100.0 34 .............................. CTTTTATCAAATGGTGATATAAAACCTTTTGAAA 33022 30 100.0 35 .............................. CGAATAAATATTCCCCTAGGAATACTTTCCCTAAA 33087 30 100.0 9 .............................. GTAGGTGGT Deletion [33126] 33126 30 86.7 30 G......G.......T..........T... TTGTATATGTTAAAATAGAAATAAATGTAG AAAC [33150] 33190 29 83.3 31 ......TT....T...-...A......... ATATTTAGTTTTAATTCACAAGGATTAGTAT T [33204] 33251 30 80.0 0 .......G......TT..A....C.....C | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 97.2 34 ATTAATAAATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAACATATAGCTAATATTAGATTTATAGAAAATATTGATATTAAAGATATTCCTGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGGGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGGTATATGAATTAAACAATACGAACAATATATATAAAATTAACAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : CGAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGGTGTTTGATTTAAAAATAGATAATATATATGCACATATAAATAAAGAAGTAAAAGAAACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACACATAATTATACCAAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGGTTCCAACAGAATAAAATGGATAACAAATTAGATGAAAAAGATATAGATTATGATTACCATGGTGAATTATCTGCATTGTTGTTTATAGATATGGAATATAGTAATATTAAAGAATATACATTCAGTAATAATAGAAGACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 1320188-1321469 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063965.1 Clostridium botulinum strain BKT2873 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1320188 29 100.0 36 ............................. AATAAACAAAATATAGCGAATACGATTGAGTAAACT 1320253 29 100.0 36 ............................. AGAGCATCCGCTAAAGCTTGCAATGTATCAAGTCTT 1320318 29 100.0 37 ............................. CTCAATTGCTTGCTTACAAAAGCTAGATTCAAATTAT 1320384 29 100.0 37 ............................. CTAAATATTTCTTTATCATCTAGCGTAACCCAAACTT 1320450 29 100.0 38 ............................. GTTTCTTTTATTAATTCTCTCAATTTATAATTTTCTGC 1320517 29 100.0 39 ............................. CTAATTTTAGAAATAGATTATACTCATTTTACTACACAT 1320585 29 100.0 37 ............................. TTTCTTTTAGTTCATCAACTTTCAGACTCTCTAAATT 1320651 29 100.0 36 ............................. ATATATACAAGGGTTAGAGATACTATAAAATTGTAT 1320716 29 100.0 36 ............................. ACATGACATGGGACAAGTTTTATAACTATGTTGTAG 1320781 29 100.0 37 ............................. TTTGTAAAGCTTGGACAGTAACATTCCCAACCATTCA 1320847 29 100.0 36 ............................. TTCTTTAATTGACCTAATACATTAGAATTTGTACTT 1320912 29 100.0 35 ............................. TTTGTTTACTCTCTATGTATTCTGTACCCTTATCT 1320976 29 100.0 36 ............................. AAGTAATTATCTAATTCTGCAAGAGATTTATCACTA 1321041 29 100.0 36 ............................. ATTTTATTCACACAATCTTCATATTGTGAAGCTATA 1321106 29 100.0 38 ............................. GCAGATGATGGAGATGACATACCATTTTAGGAGATAAG 1321173 29 100.0 38 ............................. ATGATAAAATGTTACATCATTTGAAAATTGATAGTTTG 1321240 29 100.0 36 ............................. TCAAAAGGTTACGGATAATAATACAAGTATTAATAA 1321305 29 100.0 37 ............................. AACTAGTATCAGATTCAATCATTCCTTCTGTTGCAAT 1321371 29 100.0 36 ............................. AAGGAATATCAAAACAATATTAGTAACTGCATGATA 1321436 28 93.1 0 .....................-.T..... | C,AATA,C [1321448,1321453,1321460] ========== ====== ====== ====== ============================= ======================================= ================== 20 29 99.7 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGAAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : TTGAATAATTTTACAGTTAAATAGATAAATACTATTTTATGCTATTTTTAAATTTTCAAAAATTTTTTCTATAGGTTGGCCGTTTAAGGCTGCTGAATAAATAAAAATAATTTGAGCTTTTTTAAAATTATTTTTAGCTAATTTTAACCCTGTATTGAATTGTAAAGTTTTGCTTGAGTATAACTTACAATAAGTATAGGTTATAAACATTATAGTAAGATATCGAAGGATACTTCTTTCACTTCTTACTTGATAACTATCTAAACCTAAATAATTTTTGCAATCTCTGAAGAATGGTTCAATAACCCACCTGTCGGTGTATTTAAATAGAATATCTAAAGGTTTTAATACTAGGTCTGTGGATATAAATGCTTTTAAAGAACCTTCTTTTTGAAAGGATTCTTTGGGATAACTTAAAATTATTGAAACATTTTTCATATCATTTAAGTGTCCAATATAGTTATAAATATAGTAATGCTTACCTTTAACTTTGACGAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1322821-1324504 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063965.1 Clostridium botulinum strain BKT2873 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1322821 29 89.7 37 A..A..G...................... TTTGGTAAATAAGAGGTTACAGGTTTTTTAAATATGT 1322887 29 100.0 37 ............................. TTATTTTTTATGTATTTCAATTAGATCTGGTCTATCT 1322953 29 100.0 36 ............................. TTTTGGTTGAGATTAATACGAGCTTTCAGACTCTTA 1323018 29 100.0 35 ............................. TCTATTGAAATAATAGCTCTTTCTTTAATAACTTC 1323082 29 100.0 38 ............................. CTCTTTTAAAAGACACTTCTAAACTTTTAATCGCACCT 1323149 29 100.0 38 ............................. TCGTGTCGATGCTGCCGAATTTGTCTCATAAACTCAAA 1323216 29 100.0 39 ............................. TTGTATAGCATATATTGAAGCGGATAATCATAATATCTT 1323284 29 100.0 38 ............................. CAGGAAGTTTCACGTTCAAGTTTAAACCGTTAGCGGGA 1323351 29 100.0 37 ............................. TTTATAAATCTCTGTGCTTGTTTCAAAATCACTCTGT 1323417 29 100.0 39 ............................. TAATATCCCGAAAAGTCAATACGCCCATTAGCGTTGCAA 1323485 29 100.0 38 ............................. TTAATACATATATGTCACCATCTTTCAGTGCCACCTCA 1323552 29 100.0 37 ............................. CTAAAACCTTTGCGTTGCATTTCTTCGATTGCTTCGG 1323618 29 100.0 36 ............................. GGCGGATAAAATGATAAGGGATGATTTAATAGAACA 1323683 29 100.0 36 ............................. AACGCTATCAATATTCCCAATACAAAGAGTATCTCT 1323748 29 100.0 39 ............................. GGTTTATTATATATTTATCTTTATTAATCATATATTTAG 1323816 29 100.0 36 ............................. CAACATAATACCTATAATAAGTATAGATAAATTAAA 1323881 29 100.0 38 ............................. CATTAAGTTCACAATCTACTATTTTTGCGAACTTATTT 1323948 29 100.0 40 ............................. GTCTACTATAAGAAAAAGATTTAAAAAAACGGGATATTTA 1324017 29 100.0 38 ............................. AGATTCGTTAAAGGAATATTTGATTTTTTAAGTGGTGT 1324084 29 100.0 36 ............................. GGCAAGGCAGAGGATATAAAACTGCCTACACATAAA 1324149 29 100.0 37 ............................. TTAAATATATTGTTTGTAATTTGTCTTGAGCTTTAGT 1324215 29 100.0 36 ............................. AAATCAAAGGATGGAGATAGAATGGTATGGCTTACA 1324280 29 100.0 37 ............................. ATTTTTGAGGCTATCCCATTTGTTCATTATGCTTCCA 1324346 29 100.0 37 ............................. TAAAAACTTAGGAGGAGTTGAAAATGAAAATAATAAA 1324412 29 100.0 35 ............................. GTTGATAATTTGCATAAACTTTTCTACCTCTTCGC 1324476 28 82.8 0 ................TA.G.-...G... | T [1324500] ========== ====== ====== ====== ============================= ======================================== ================== 26 29 98.9 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : AAAATAACATTTTTCTATAGGATTTATTGCCTTTGACGAGGGCTTTGTTTTTTCAGAAATAGTATCATCAATTATTAAATAAATTGGTTTTTGTGATTTCTCGGATTTATTCCAAATAAGCTCTATAACCTTAGATTTCAAAGCATTTATTAATAAATTTTCATCCCAATTGCTTTTAGATAAAAATCTTGTAATACTAGTTCTATGCCTTTTAGAAGCAAGCTCCGCTATGTCAGATACTTTACCATTAAATCCTTTTAAAATCATAGCAGTCATAGTACCTTCTAAATGCTCTAATTGAGGTTTAGTTAGATATAAATCAAAATTTAATTGTTTAAAAAATTTGTATAGTGATAATTCATTTGATATAATTAAGTTCTGAAACATTTATGCATAACTCCTTGTTATTGTTATTGTGTGAGAACTTAATTATAACAGTATTTTGTATAAATGTTTTTTTGTTTTATTTAACTGTAAAATTATTCAATCATTTTTGCACT # Right flank : TAATTAAAAATACAAAAAAATAAATAAGTCATCACTTTGTGATATAATGTTTTCGCTTAAAAAACCATAATATACAAAGGATGACTCAAGTATGATTATAACATTAAATATACAAAGCGAAAACATTTATTTTAAAATTTTTGAAACTGTTAATATTGCATTTAATAAACTTGGCATTAATACTAGAAAAGCTAAAGGTAGACCACCTAAATATTCAGATCAACAAATTGTTGCATGTATGATATATGGTGTAAATAATAGTATTTTTAGTCTTAGAGAACTTGAATATAAAATTAAACAAGATATTGTATTTCAAAAGATTATAGGTTTAAAAGAAGTTCCTGACCATTCTACATTTTCTTTAAGAGCGATAGCTTTAGAAAAATACGTGTACTATGGCATTTATGCTATTGATGGTACTGCATTAAGGAGCTCATTATATGATAGCGAAGCTAGGTATGGAAAAGGAACTCGACTTGGCAGATATAAAGGATATAAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1326882-1327244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063965.1 Clostridium botulinum strain BKT2873 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1326882 29 93.1 37 ......C..A................... GATTTTAGCAAACTAGGTAAAGTAAAAAGTGTTAATT A,CA,ACC [1326885,1326888,1326893] 1326954 29 100.0 35 ............................. TAACAATTCAGATAACTGTTTTTGAGTTAATCCAT 1327018 29 96.6 37 ..................A.......... TTTGATTACTTTAATACACTTATACATGGGATTACCC 1327084 29 100.0 37 ............................. AGCTTTGTACTTACTGTAATATTTGCTCCAAAACCGG 1327150 29 100.0 37 ............................. ATATAGCAAGTGCGGATTATCAAAAATTGATATATCA 1327216 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : GACACATCCTTTCTTAACTAAATATTATTTTACTTAGTTCGACTCAATGTGTCCACTACTTTATACTAACACCAAGAATATAATTTATTAACAGACGTAAATATGCGTAAAGCAAACAGTATAGAATCTTTTAAAGATGAATCTAGATATAAAAATGCTCTTTTTATGCAATCGCCAATAGGTAAAAATTTATATAAAAATAGGCTAAAAATTGAACAATTATTTTCTATACTTAAAGGATTGTATAACCTAGAAAACCCTAGACTTTACGGACAAAAACGCTATGAACGCCATGTTAAGTGGGTTCTTTTATCATATCTTATAGACGAATTTAATAAGGTTAATAGCAAAATAAATTCTAGAAAATATCCTTGGAATCTATAGTTTTTATCGCGCTAACGCACTTACTTTTTTAAATTTTTAAAGAACTTCCTAATGCACACTTAAAATTATTAAACACATGCTCGCGCATAAATGCTTTTTAAGATTTGTAAAAATTA # Right flank : TTAGCTTTGTCACTAGTTCTAAATGTTAATCTTTTTGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGCTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTAAAAATTTTACGGAGTATTGTAAATAATATTTAAATAAATATTTTAAATCTCAAGTTATGATAAATAATAGTAATTCTAATAAACAGGAAATGAAAAATATCATAAGTAATTTCCAAAATGAAAAAGCTTTAAAAGCAAGACAAATGTTTAATGTGGGCA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //