Array 1 14570-14318 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCX01000023.1 Clostridium sp. AM16-23 AM16-23.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 14569 32 100.0 43 ................................ GACACACATTTTGAAAAGATTAAGTCGCATCTAACGAATGCTC 14494 32 100.0 40 ................................ GACACATTCCACTTCTTTTCCGGACAACCAGCTTCCGTTT 14422 32 100.0 41 ................................ ACCACGCCCGCATTGACGCATATGCTGTCATAACTGCTTCG 14349 32 81.2 0 .........C..A.......CA....AA.... | ========== ====== ====== ====== ================================ =========================================== ================== 4 32 95.3 42 GTAGAAATGAAGGTCGCCCCATTCAGGGCATT # Left flank : CAGCTGCTATGGGCATATAGGAATTTTCTGAACTGAAAATTCCGTATGATACAGTTGAGGCTGCGGATTTTGCTGATTTGGAATGCGAAGCATCGGCAAAATCCTGTCCCAGTGCGCAGGCAAGAAAGCCTGTGTACTGGGACACAACTCGCTTTGCTCAAACAAGTGTCCGCTGTTCTCCAACGCAGTCACCTGTGAGCTAAGAGGAAGCCAGCTCCCCGAATCATGCACTCCTGTCCGGAAGCTCACCGCTGGGAGATGGTGGGATCGCAAATAATGGTCGCAATAATGGAAAATAATCTGCTTGTGGAGCCTGAAGAAGTTTGTTATAATGGGGGCAGCTGAAAGCGAGAAATTACCTTCATTTCTGCGATAAATATGAACAAACTGTGAACACGCCAAAAATCACCTTCAAAAAAGCCTTTTTCAGAATATTCTGGAAAATACTTGCAAAAACGGGTCCGCAAAGCCTTTATTTATGCGGGTTTCCGGAGGCAAGG # Right flank : GCCACAGCGCGACGCGCTCATAACCCGATACCGGCACCGTGCAGAAATGAATCTCATCTCATTCCGCACACACCACCGGACATTCCAAAAAACGCAAAAATAAGGGAATACACACGCGATCGAGTGGATCGCAGCAGAGAGAAGAGAATATTTTTATAACTTGAAATTTCTGAGAATAAAAAAGAAAACGCATGTTTTGCTCACAGTCAGAAACTGTGGCAGGACATGCGTTTTTATATAGGAAGTTTTTTATATAGGAAATGGATACAGCCAGATCTTCAGTGAAGATACTGCTCCCGGGCCTTTTCCATCGCATTGGAAAAGCATTCTTTTGCGTTTTCGATGAACAGGGTCAAGATCTTCGGAAGGTAGGCATCTTTTCGGTAAACAGCGACGATTGCGTGTTTTTCGATCGGAAATTCGACCGGGAAGTAGAGAATGTGGTCGGTTCGTCCGGGAACGAGGATTTCGCCTTCCATCGTAAAGGTACAGGCGAGACC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAGGTCGCCCCATTCAGGGCATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 18735-18474 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCX01000023.1 Clostridium sp. AM16-23 AM16-23.Scaf23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 18734 38 100.0 35 ...................................... GATCACTGACGATTGTGTCTTCAGTGTGTGGATAA 18661 38 100.0 38 ...................................... CACAATGGCATGGCATGCTCGCACTCTCCCCTGTTTCA 18585 38 100.0 36 ...................................... GTTTTTCCGCTTGTCTTTTTGTCATTTCTCGCTCTC 18511 38 86.8 0 .....................A.........A.TT..C | ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 96.7 37 GTAGAAATGAAGGTCGCCCCTTTCAGGGCATTGACACA # Left flank : CAGGAGTGCCGTGAAAATCTGGAAAAGGATTTTTGAGGTGTGTTGGCGAGGGTACGCGGTGAGTTTCCGGACAGGAGTGCCGGGGATGCGGGGATGGTTCCTCTAACCTCCCGGGAGACTGCTAAGGGCAGAAAATCGACGACACAACTCGCTGCGCTCAGACAAGTGTCATCGATTTTCTAACGCAGTCACCCGCGAGCTAAGAGGAAGCCAGATCCCCGGATCATGCACTCCTGTCCGGAAGCTCACCGCTGGGGGATGGTGGGATCGCAAATAATGGTCACAATAATGGGAAATAATCTGCTTGTGGAACCTGAAGAAGTCTGTTATAATGGGGGCAGCTGAAAGCGAGAAATTACCTTTGCTTCTGCGACAAATATGAACAAACTGTGAACATACCAAAAATCACCTTCAAAAAATCCTTTTTCAGAATATTCTGGAAAATACTTGCAAAAACGGGTCCGCAAAGCCTTTATTTATGCGGGTTCCCAGAGGCAAGT # Right flank : GAAGCTGAACAGACCAGAGAACTTTCTTTTTGAACAAGAAAGTCCTCTGGTCTTTTTCTATTCGTGAGATTGCAAGTGTACAAAAATCGTGAACTGGCTATCGTAAAATAAAAACATAAAGACAGAGAGTTCAAAAGAGGATAACAGCAACATAAAATTTTCATACATTTTAAACCAACGGTTGAAGAAGTTTTTTGTTGTCTCTGTTAGAATAAAAGCAGGATCAAATTGAAAGCTCTGATGGACTCTGGCCGTGAAAGCAGGAGGCAGGGGAAGCGCTGACAAGCAGAAAGGAACGAGTATGTACGCAGACGATAAATATAAGATTGTCGGGACCATTTCTATTCCGGAGGAGAAACGGGAAGAGTTCAACAGGAATGTAGAAAAGGTTCTGGATGTGTTAGGGATCAGGCAGACGGAAAAGCGAATGGTCGGGGACAGGGAGATTACGGTGTTAAAAAAGCCGGAGGCAGATGAAGATGGAATCGTAAAGTTTAATT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAGGTCGCCCCTTTCAGGGCATTGACACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 95825-97313 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCX01000006.1 Clostridium sp. AM16-23 AM16-23.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 95825 33 100.0 35 ................................. ATTACATTGAAGCCGTTCAATAATGAACGTCCGAA 95893 33 97.0 33 C................................ ATCTATTCCATGTGCAAGAATCTTATGCTCACT 95959 33 100.0 33 ................................. CACGATCAAAGGAGCGTTATCGTCCTCAGACAA 96025 33 97.0 34 A................................ ATCATGAATTGGATCTTTCATAAGTTCGAGATCA 96092 33 100.0 33 ................................. CATATGGGTGTTGTGGAGGATGCATATGATACT 96158 33 100.0 32 ................................. TTAGATGATGCAGATGACCTTTATTAAGATTT 96223 33 97.0 33 A................................ ATCGTTTTCTAATGATTAAGCATACTTCCGATG 96289 33 97.0 33 G................................ AACACCTAACAGAGGCAAGTCTCTCTTGAACTC 96355 33 97.0 32 C................................ GATCTTACCGCCGCTGTTACCGCAGAACAAGC 96420 33 97.0 33 C................................ TGATGGAGGCGTTTCCAGAGAAGAATATGCGAA 96486 33 97.0 34 G................................ TGTTATCCTCATTATACTGATTTCGACGCTGGTA 96553 33 100.0 34 ................................. ATCCAAGACAGCGCTATCGAGTGTCTCGACGCGT 96620 33 97.0 33 A................................ AATGCAAAGAATTATTTCCCGATTGTGTCAGAC 96686 33 97.0 33 A................................ CACCAGTCCTCGTTGTCGATGATTCTCTTGTCC 96752 33 97.0 36 A................................ AATCTTCAGTGTTCCGACTTTCCGGACCGGATTGCT 96821 33 97.0 34 C................................ ACAGATCATAAGGAGGAACAGCATGGAAGAATTA 96888 33 97.0 33 G................................ ACTTGAGGACAAAGTACCGAAACAACAGTACAC 96954 33 97.0 30 G................................ CCGCAAGATCAGAGACGATGGAAGGAAATT 97017 33 97.0 33 C................................ TTACATATCCAGACAAGACTCAACGTCTTTATT 97083 33 100.0 32 ................................. CTGTACAGTTTGAGCCTTTACTTTATGTTATG 97148 33 93.9 34 G...............................T ATGTCATCCAGTACTTTTCTGGATTCTTCAGGGA 97215 33 87.9 33 A.........T........A............T AGCATACCTTTCGCCGCTGTTACCGCATCCACT 97281 33 90.9 0 C.........T.....................T | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 97.0 33 TGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Left flank : ACATTTTTATGGAAATGAGGTGAGACATATGTTAGTATTAATTACCTACGATGTAAACACAGAAACAGCAGCAGGGCGTGCGCGTCTTAGGAAAGTTGCCAAGCAGTGTGTAAACTATGGAAGACGCGTACAGAATTCTGTTTTTGAATGTATCGTGGATAATGCACAATGTATCATGTTAAAATCACTTCTTGCAGACATTATTGATGTCAGCGTTGACAGTCTTCGTTTTTATTACTTGGGAAACAAATATGCAACCAAGGTGGAGCAGATCGGTGTTGACAAGGGAATAGCTGCCGATGATGTGCTGATCGTTTAAATACAAGTCGGTGCGAACCAAAAGCATACATGAAAATGCTAAGGGATTCGCACCTGAAAAAATGCACAAAAATTATGAAATACATTGATTATTGGAATGGATAATTCACATTGAATGGAGATTTATGTACAGTATGCTAAAAGGAAATGTGATGTTTTAGATGGATTTTAGTAATCAATGC # Right flank : TATGTGTCACAAATCGCTATCATCTTGCAGAGGTGTGAATCAAAAAATCCATCTCCCCATTGCAATTCTCCGCTATTTTGCGTATACTTATAATATGAGTGGATAGATGCAGCCGCTATGTGTTGGGCATTTTGCCTGCCGTAGTAGAACGGGACACTATCCACTTTTTTATGCCTATAAACAATCAATATGTGAGACGATGTTAAGAAAATATAAGTGTTCAGTTTATTTGCTAAGCATAATTTCAGCGGCAGAAGAAACACACAAAAGAATCAATAGCCCTCACGCGGACTCCTGCAGCAGCCGGATCAGCTCCTCCATCGCCGGAAGTGTCTGTTTTCCTTTCAGCGTAACGATGGAGTAGCTGGTAGTATCAGCCGGATTTCCGATCCGGAAGCAGCGGACAGGCTTGGGATAGCGGAAATTTTTCATGTACTGGTAGAAGTTGAATGCGATCCCATAGCCCTCCGCGGCGAGCTGACAGGCAGATTCAAGATTTT # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 160867-162875 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCX01000003.1 Clostridium sp. AM16-23 AM16-23.Scaf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 160867 31 81.2 36 .............-AT..A....AA....... TTTGAGGGCGGCAGAAAAGTCGATTACCTGATTTTT 160934 32 100.0 34 ................................ ACGATACAGGCGGATCATCAAGCCGCTAATATGT 161000 32 100.0 34 ................................ ATCTTAATACCGGCGCTGTCTTATGTACTTTAAT 161066 32 100.0 34 ................................ AATAGAGGATCGCATTTTCTGTGAAGTCATTTGT 161132 32 100.0 33 ................................ CACAACTTTACCCGTTGACATTCACGCCGTGGT 161197 32 100.0 35 ................................ AATGCTCATGACCTAAGTTATGCACATATACAATC 161264 32 100.0 32 ................................ GCATATTCCAATTCATATGTAACACCTTCTCC 161328 32 100.0 33 ................................ GGATGAGTTTGTGAAGCGCGACATCTTCAATAC 161393 32 100.0 34 ................................ CGGCGGTGACAGCCGGGAACAATGCAACTACGGC 161459 32 100.0 35 ................................ TATTCATGTTTTAAAACAACGGTTTCCGCTTTGAT 161526 32 100.0 33 ................................ TGTGTACGCCTCGTAAAGCTTTAAAAAATCAGT 161591 32 100.0 35 ................................ AGCGGTATAACTCCACTTTTCAGAGTGATTATAGC 161658 32 100.0 33 ................................ AATAAGATCATGGACGGAGTCGCATTTAACGAC 161723 32 100.0 36 ................................ TAACTCATCAGGAGCCGCATATTATGGGGTAACATC 161791 32 100.0 33 ................................ TTCCGGCAGGCTACAGATGCAACCCCGACATCT 161856 32 100.0 33 ................................ GATGGGAAACACGTGAGGACGCAAAGTTTCGAT 161921 32 100.0 33 ................................ TATAGTGTCATATCCGACACCGCCGTCCCAAAT 161986 32 100.0 33 ................................ TAGCCGTCCTTCATATCTTCCTTAGTTCTAGTT 162051 32 100.0 33 ................................ AATCAGTACAACAGTCAATGCAGGGCGAAACGC 162116 32 100.0 34 ................................ AAAATCTCACATTGTGACAAAATATGAAAACTGT 162182 32 100.0 35 ................................ ATTGACCGTGAAATAGAGAAATCGGAGAAGGAGGT 162249 32 100.0 35 ................................ GGTATATGGAACGTAAGACCGCATAATTAAGCATT 162316 32 100.0 34 ................................ TTGGTCTGAACGTCGCAACATTTAGATCTGGGAT 162382 32 100.0 33 ................................ CTGGCGGTTTACGGCGAATGACCTTGTCTCGAT 162447 32 100.0 33 ................................ AGTTTGGAGGATCTCATCAATTACAACATTGTT 162512 32 100.0 34 ................................ CATATCCGCCTTCAGATATTGCTATATCTTGAAT 162578 32 100.0 36 ................................ TGTGCAGCACTTTTCTGGTATATGATCGATCAGAAC 162646 32 100.0 33 ................................ CGGAAGTTGTAAGCCGTCAAAGAGAGTAGAATC 162711 32 100.0 35 ................................ TATTCTGATCCCCATCGTCACCATTGATATCAGAC 162778 32 100.0 34 ................................ AGTCATCAACCAATTTTATCTCATTACCAATCTC 162844 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 99.4 34 GTTTCAACTCACAGCCCCGCAAGGGGGCTGAC # Left flank : CCCATATTTCTCCCTCATAGATGCAAGCTGCTTTCTCGCATTCATCGTCTGCCCCGCTTCTATCTGGCTCTCCGACTCCTCCAGCTCCTTATAAACTTTTGACAGTTTCATCATCCGTTCGTAGTTTTCCATGCTCATGAGCACCATGTCACCATACCCATTTTTCGTAATAAAGATTGGTTCTTTTGTAGAATGACACATTTCTGAAATTTCTGAAGTGTTTTTCAAATGACTGATTGGAACAATTTGCGGCATAAAAGCACCTCCTTTATGTGGTTTAATTGTACCATAATTATACCATGTATGCAATTTTATATTATTTCATTGGGTATGTGATAAACTTCCATTGTTCATTTGGAACGCCTCCTCTGGTTTTGAGTTTGGCTTGCGACATCATATTGCAGGAGGCTTTATTTAGTTGTCCTCACCGGCTGCACTTATTCCATTCTCCCAAGAACAGCTGAAAGCTTAAGTTTTTCATTTAGATGTAGAGAAAAATT # Right flank : CGGCAATTTTACACAATTTTCGCATATTTCCCATGCACGTTTCTGTGCTCATTGCACTTAATCATTCATTTATACACATTGCTCCCGATATTTTTCTCCAATATCGCCCTGTTTTTACAGTGCGAATGTTTCGGGATATTTCTGTGTACTTGTATTTCGCACTATAATATGAGTGGATCTGTAACATCAAAACCAGGTTTTGCACCAATATGCTCCACCTTGTTTTTATATTTTTCACCCAAGTAATAAAATCTTAAACTGTCCATCTCCTTGTCGATCAGATTTTCCAGAATATCCTTTACCTGCCTGCATTTGGCTGCATCCATCTGACACTCAAATACAGAATTCTGAACTCGCTGCCCATAATTAACGCACTCTTTTGCAACCTTTCGTAGCCGACTTTTTCCAGCCACTGTCTGCGTATTTACATCATAAGTAATCAAAACCAGCATTCCTTTCACCTACTTCCAAAAGAATGGCGGATATTCATCTAAATCCCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCACAGCCCCGCAAGGGGGCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //