Array 1 64569-63870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJWO01000005.1 Escherichia coli strain MOD1-EC3864 MOD1-EC3864_5_length_235394_cov_48.6901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64568 29 100.0 32 ............................. ATTTTGGGGGGCAACCAGGCAGATGAAGTAAA 64507 29 100.0 32 ............................. GCCTGTTTCCTGACGCTGGCCGACAGTCGGCC 64446 29 100.0 32 ............................. CCGGCGCGCTGGCGTCAGGCGTTCCAGTGGTG 64385 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 64324 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 64263 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 64202 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 64141 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 64080 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 64019 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 63959 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 63898 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 91456-90268 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJWO01000005.1 Escherichia coli strain MOD1-EC3864 MOD1-EC3864_5_length_235394_cov_48.6901, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91455 29 100.0 32 ............................. TAATACGCATCTCATTCATTGTGCCTTGTCGA 91394 29 100.0 32 ............................. TCCACGTAGACCCTAAAACAGGTAAACGATTA 91333 29 100.0 32 ............................. TCGACAGTGAATTGCTTGCGCAGACGCGTGAA 91272 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 91211 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 91150 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 91089 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 91028 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 90967 29 93.1 32 ..A.........................T AGATCGCGCCACGAGGAAACGAATATGAACGG 90906 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 90845 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 90784 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 90723 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 90662 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 90601 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 90540 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 90479 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 90418 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 90357 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 90296 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //