Array 1 32991-42096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZD01000008.1 Bifidobacterium minimum strain LMG 11592 Contig08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32991 29 96.6 32 ............................C TCGCCGACGACCAATACACCAACCCGATCAGC 33052 29 100.0 32 ............................. ATTGATGGCTGCCTGTTCCGCATCACGCAGAT 33113 29 100.0 32 ............................. AACCTTTGGGCCGCGGTCGCCGCGAACGGCAG 33174 29 100.0 32 ............................. ACGAATACGCCATCGGAAACAGCAGCCAATCC 33235 29 96.6 32 ............................C ACGCTGGCGAGTTCCGCGGCCTGGAGGAGTTC 33296 29 100.0 32 ............................. CGTCTGCTCGCGGACAAGGTCAGTTGGCAGGC 33357 29 96.6 32 ............................C CGTTATCACTGGCTTTGGGATCCCAGGAGTAT 33418 29 100.0 32 ............................. ATCGTTGAACGTCATGAGCTTGTTCCGAAGAT 33479 29 100.0 32 ............................. TCGAAGCGTGGCGGTTCGGGCGGTTCCATGAG 33540 29 100.0 32 ............................. CTGGCTGACATGCAGGTTCAATCCGTAAATCT 33601 29 100.0 32 ............................. GGGACGGCCGTTCCGGTAGCCAAGCCGGCGGC 33662 29 100.0 32 ............................. TTGAGAACCACAACATGTAGTGCCAATTCTCA 33723 29 96.6 32 ............................C GCCGACAGCCAGCCCGGTCAGTCAGTCACAGG 33784 29 100.0 32 ............................. GTGCCTGTGGACTCGGTGTAGGACTCGTTGAC 33845 29 100.0 32 ............................. TATCGTGGCGGGACCGAGTAGAGTTCGGCCTG 33906 29 96.6 32 ............................T GCTCGACCATGGCCAGACTGCCATGCCCGACG 33967 29 96.6 32 ............................T TCGATGCGTCCGGGCGTCTCCTCCTCGAGGAG 34028 29 100.0 32 ............................. AATCGAACCGCCCGTCGCATGCGCGACGATCA 34089 29 96.6 32 ............................C AGTCCGAAGGGATTCGCCGTAGTGTGAAGCGG 34150 29 100.0 32 ............................. GACGAGGGAATCAGAGTGCACGTCGCCACTCA 34211 29 100.0 32 ............................. GATTGGCGACCTTGTGGCAGGCCATGCCGGAT 34272 29 96.6 28 ............................A CAGATACAACAGATACAACGGCAACGGC 34329 29 96.6 32 ............................T GGGTCGATGAAATCGACGGCGGGACAGCCTTT 34390 29 96.6 32 ............................T ACTGCCATGCGGCGGCAAAAGCCCACGGGGCT 34451 29 100.0 32 ............................. CCTGCAGCCGGACGGCGATGAGCGTCCATTCA 34512 29 100.0 32 ............................. GAAAAGTCATGAGTAGGAAGAATCTCGTCACG 34573 29 96.6 32 ............................A TCGCTGACGGTCTTTCCCGTTTTCTCCGCGTC 34634 29 100.0 32 ............................. GCACTGCAGCGGATGCTTGGGCATGCGAGCGC 34695 29 96.6 32 ............................C AAATTCGAGAAAGGAAATCAGCATGAGTTGGA 34756 29 100.0 32 ............................. TCTCGACGCGTCGGCCGATTTGGATCGATGAG 34817 29 100.0 32 ............................. GCCCCTGCCTCCCGTAGGAGACAGGGGCACAG 34878 29 100.0 32 ............................. GTGAGCAGGCCCAGGATTCGTTTCCTCATTGT 34939 29 96.6 32 ............................T GGTCGGGTTTGCGGTAACGGACCGTGTACCGG 35000 29 100.0 32 ............................. TCCGTGTACGTACCCAGATAGGTCGCTCCAGT 35061 29 100.0 32 ............................. AATCCATCGTCACCCTCCTATCCGCAATAATC 35122 29 100.0 32 ............................. TATACGGGCGATCCGAGCACCGCATTGTATAT 35183 29 96.6 32 ............................C AGGAGACATCCTCCGCAGTGGACCCCGTCGAC 35244 29 100.0 32 ............................. TAATGGAAACTGATCCACAACGATTAGAATAT 35305 29 100.0 32 ............................. CACACGCGCGTGTAGATGTCGCCCTTCGTGCC 35366 29 96.6 32 ............................T ATCGCACCGGCCAAATTCCTTGAGCCCAATGG 35427 29 96.6 32 ............................C CAGTTGGTCAACGCCTACGGCAAGCACAGCGG 35488 29 96.6 32 ............................T TTCATGGCCTTGCTCACGTCGGTCTTGATGCC 35549 29 100.0 32 ............................. TCAGGTGAGCAGTACCGTTACCCAGAATGCCA 35610 29 96.6 32 ............................C AGTGCGTCCGTCGCTCGAGCCAACGGCATCAG 35671 29 96.6 32 ............................T TTGTGGAGTTCGGTCCTGCTCGGCAAGAAACA 35732 29 100.0 32 ............................. TGGAGCGTCCATACATTAAACCAACCATATGT 35793 29 96.6 32 ............................T ATTCGCGGAGTCTTCAGAGACCACTTTCCAGC 35854 29 96.6 32 ............................C CGGTTGTACTGGGACTCGTAGCCGATGCCAAG 35915 29 100.0 32 ............................. CATCATGAGCGCGGTGAGCGCGAGCGCGATCT 35976 29 100.0 32 ............................. AGTCGCCTGTGAGGCGTCGGTTGACGATGGCC 36037 29 96.6 32 ............................C CGGGAGCCGATGCTGGCCGAATGCTCGGTGGA 36098 29 100.0 32 ............................. AAATATGGAGCATCGATGCCATTGCCGTAAAC 36159 29 100.0 32 ............................. GCCGCATGAAAGTAAGCGTGTCGCCCGTCTCC 36220 29 100.0 32 ............................. GCCGCATGAAAGTAAGCGTGTCGCCCGTCTCC 36281 29 100.0 32 ............................. GGCGTCGGCGGTTCGGACATGAGCGCGATCAT 36342 29 96.6 32 ............................T GCCATCCCACAGACCCTGAAAGAACCCACTAA 36403 29 100.0 32 ............................. GGCATGGTGTGGAAGGCGGTGGGGGCCACCGG 36464 29 100.0 32 ............................. CTTTTCTGGAGCGAGTCACCGAAACCCTGCAT 36525 29 100.0 32 ............................. TGCAACCGATTTCCAGCTCCGATTCTACCGTA 36586 29 96.6 32 ............................T ATGCGCACGTCCGTGAACTTTTGTCCGGTCGG 36647 29 100.0 32 ............................. CGCAGCACCGGACTGTCATTCGGATGCTCCAA 36708 29 96.6 32 ............................C ATGATGAAGCATATGGTTGGGGTGATGCGATC 36769 29 96.6 32 ............................T GAGATTCGAGTGCGGGAGGATGGCCGGTTTCT 36830 29 96.6 32 ............................T ACCACTCGCCTTCGCCGTCTGAACCGCTTTAA 36891 29 96.6 32 ............................T AATCCCGTTCATGCAGGCGTGCGTGTTCACCG 36952 29 100.0 32 ............................. GGAGCCGACGTGAAGAACAACATGAAGACCGC 37013 29 96.6 32 ............................C AACGCCTGCCCATCCTCCCACTTGCCGGATTG 37074 29 96.6 32 ............................C AACCGGTTACCATGCCAGTCGAGCGCCACACC 37135 29 96.6 32 ............................A CTGTTGATAATATCCTTGACCATGCTCTCCCG 37196 28 96.6 31 ....................-........ CATTTCAGTCTCACCCGATTTCGGCGTGATG 37255 29 96.6 32 ............................T CGAACGGTCTACAGAGTGAGGAGCAGAAGCAA 37316 29 100.0 32 ............................. AGCGACCCCAGTTCTTTGCGAAGTCACGACTG 37377 29 100.0 32 ............................. CAGGCATATTCAGGATTGCATGAAAAGAATTA 37438 29 96.6 33 ............................T ATCTGAACGCTCTACTAGCCGAATTGCAGCAGA 37500 29 100.0 32 ............................. ACCTGAAATGGTGCTACTACATGAAAAGTGAC 37561 29 96.6 32 ............................T ATCGGTGGCGGTGGACGTGGGATATTGCAAGC 37622 29 96.6 32 ............................T GGTGGACGTGTCGTTACCGTGACTGATACGCC 37683 29 100.0 32 ............................. GAAGTGGACTTCGTCGAACTCAGCACGGGCAA 37744 29 100.0 32 ............................. ATCAAAGAGCATATCCAGGGAGTGTACGAAGC 37805 29 96.6 32 ............................T ACTTGCCACCCTCATCACGGAAGAACGGCATG 37866 29 100.0 32 ............................. GCCTCAGGCATCCACTCGTTCGCCTGCTGCAC 37927 29 96.6 32 ............................T GTGCGGTATCAGGTGTTAGATAACTAAGCAGA 37988 29 100.0 32 ............................. AACACAGCCGACAAGAGCTACGCCAAGCACAT 38049 29 96.6 32 ............................T CTGAGAAAGCTCATAAATGGGAGAAGCCGATG 38110 29 100.0 32 ............................. ATTGGTTTTGCCCTGATACTCGTCGGACGTGA 38171 29 96.6 32 ............................T GGCTATGTCACTCATGCCATAAAAGAAAAACC 38232 29 100.0 32 ............................. AACTGCGCGTCCAGAACTCGCCACGCCAGACC 38293 29 100.0 32 ............................. ATGCCAGCGACACCCAACATGGATCTTACGAC 38354 29 100.0 32 ............................. CTCCGATACCGGCATCGCCGAACTGGATGAAA 38415 29 96.6 32 ............................T TGGTAGCAGTGGTCCTCGTCGGGCGTCGCATC 38476 29 96.6 32 ............................C AGATTGCGATGAAAAGAAGAACCCATGCCAAT 38537 29 100.0 32 ............................. CTCCCGACGCGCCGCCCACAACTCGTCACCCG 38598 29 96.6 32 ............................C CGCTTGCGCTCCTGCTCGAACCTACGAGTGTG 38659 29 96.6 32 ............................T GAAGAGCGGGCAGCCGATCGGCACGGACAAGG 38720 29 100.0 32 ............................. AACGAGCAGAGATCGAACACATCGAGCTCGCT 38781 29 100.0 32 ............................. GTCTTGATGGCGGCGAAATGCTGGACGATGAG 38842 29 96.6 32 ............................T GCTACGCCGGGGAGGGTTGCCTCCTCGTTGTA 38903 29 96.6 32 ............................C GCGGCGCAGAGACTGGCGATCATCGGATGCGT 38964 29 96.6 32 ............................T GTCTGGAGTGCTTCGAGGATGGTCTGCCAGTC 39025 29 100.0 32 ............................. AACGCATCCTGGAACTTGTAGCTCAGGGCCTT 39086 29 96.6 32 ............................A TGCCACAGCGGTATGAGGGTAGCGTATGGGTC 39147 29 96.6 32 ............................T GAAACCATGCCATTCCAGACCGTCCGGAAGAA 39208 29 100.0 32 ............................. TATGTGGGAGTATTCGACGAGAACAAGCAGTG 39269 29 96.6 32 ............................C AGCCAACGAGACCCAGAACAAGACCGCCATCA 39330 29 96.6 32 ............................C CCGACGATGAACGTGGCGATGGCGGGCATGAC 39391 29 96.6 32 ............................T CCCCCGTCGAGCGCGTTCTGCAGCTGGTTGAG 39452 29 96.6 32 ............................T GGACGCCCTCGGCACGTCCCTCGACTGGCTCT 39513 29 96.6 32 ............................T TGGGGCGTCGTCTTCGGCACGCTCACCGTCCG 39574 29 96.6 32 ............................T TACAGGCCGATGGACGCAACGTGGAGGAGAAA 39635 29 96.6 32 ............................C CTGTCCCCCGCCAGTCTTGCCGCAAACCACCG 39696 29 96.6 32 ............................T TCCTGGGCGGCAATTTCCTCATCGGTCTGTTC 39757 29 100.0 32 ............................. GGGGTAACCGATGAGACATGGATATTTTCTAA 39818 29 100.0 32 ............................. GACGAGCAGCATGTGAGCGTCACGGCGACGAT 39879 29 96.6 32 ............................T AACTCGGTTCCGTTTTCGGTGGGTCCGAGTCT 39940 29 100.0 32 ............................. CGTCTTGCCGGCCGATCCAGCGGAGTAGGTCT 40001 29 100.0 32 ............................. CCCATCCGGTCAGCCTCACGATTGAACAATGC 40062 29 96.6 32 ............................T CCTATCGGGCGAAACGGTGCGCGCTCGTCCAT 40123 29 100.0 32 ............................. CCTGTTCGCCGATAACGACCGCCTGCGCAAGG 40184 29 96.6 32 ............................T CGTCGAGGATCCACGTCATGCCCGTCCAGTCG 40245 29 96.6 32 ............................T CCCATGATGCGTTGCGCTCCGGCTTGCGCGAT 40306 29 96.6 32 ............................T CGGGGCGCATTCCGTCCGGCAGATGGGGCTTG 40367 29 96.6 32 ............................C TGAGGAGGGATGAACAAAGCTGGATCCAAATG 40428 29 100.0 32 ............................. AATGCCATACGGTGACATTCGGGCTCATACCC 40489 29 96.6 32 ............................T CGTCGAGGATCCACGTCATGCCCTTCCAGTCG 40550 29 96.6 32 ............................T GATACGGTGAACGTGGTCCCCGGCCACCCGTC 40611 29 100.0 32 ............................. ATGGGCAGCAGTGCCGTGCCGAGCTTGGCTTT 40672 29 100.0 32 ............................. CCGGAGCTCGGTCAATGATTGACCCAACGCGG 40733 29 100.0 32 ............................. AGCTGGCCGAGGATCGCGGCGGTCATGCCGCG 40794 29 100.0 32 ............................. AACTCACTGCCAGCAGCGACGCGTCCAGAGGA 40855 29 100.0 32 ............................. TCCGACGGCGGATACATCTCCGGACCTGGGAC 40916 29 96.6 32 ............................T ATCAGCCCGTACGGGTTCGGCTGTCCGGCGGT 40977 29 100.0 32 ............................. GCGCGACGAGGAGAAGCCAACACAGCTCACCA 41038 29 96.6 32 ............................T ATCGGCAGTCTCCTCGACCAGACCGTGCGACA 41099 29 96.6 32 ............................C ACGTACTGGCTTCACGACCTGATCGCCGTGCA 41160 29 100.0 32 ............................. TCCCGGACGGGCTTGTCCCGGTAGGGTTTCAG 41221 29 100.0 32 ............................. CCGAAGCCAGCCGATACGCTCCCAACTGCTGT 41282 29 100.0 32 ............................. GCATTGCCGTTCATGGCGGGTGGCGTGGTCGC 41343 29 96.6 32 ............................T CGCATACCTGGTTGTGGCGAGAGACGCAGCCC 41404 29 100.0 32 ............................. GCTTGCCGGTGCGTTGGCTGGTTCCGTTCCAC 41465 29 100.0 32 ............................. GGCACGACCACCGCCATGCAACTTCAGAAAAA 41526 29 100.0 32 ............................. TGTTAGCGAAATACATGCCGCCCACGGCTACC 41587 29 100.0 32 ............................. GCGCTCAAGGCCGGAGCGACGGACACCAATAG 41648 29 100.0 32 ............................. CGTCAGGCCAACATGCAGGGCCGCGCAATCGA 41709 29 100.0 32 ............................. AACTGGGACAAGGTGAAGCAGGCGGGAGCCGC 41770 29 96.6 32 ............................T TGTTCGACGCTCACACGTGTCGACTGGTGGAG 41831 29 100.0 32 ............................. GACCATCACCGTGCAGAGGGCGCCGCTCGTCG 41892 29 96.6 32 ............................C GACTCGTCCGACAGGCTCACCGTCGTCGAGTC 41953 29 100.0 25 ............................. GCACCGAGGAGAGACGGGAGAGAGA Deletion [42007] 42007 29 79.3 32 ........T..G........A.....TTT ATACCGACGATAGTCGTTGACATCGATGACGG 42068 28 75.9 0 .G..-..T......T.......C...T.T | G [42085] ========== ====== ====== ====== ============================= ================================= ================== 150 29 98.1 32 GTTTGCCCCGCACTCGCGGGGATGATCCG # Left flank : GCTTTTTGAGATATCGCCAGGGGTTTATGTCGGGAAGGCTTCGGCGAGAGTTCGTGAACTTCTATGGGAACAGATCTGCGAGAATATCGGTTCGGGTAGAGCGATTATGGTTTATTCCTCGAACAATGAGCAGGGGCTTGAATTCAAGACGCATGGACAGGAGTGGGAGCCCGTGGATTACGAGGGCCTTGAGCTTATTCGACGACCCAACAACAATGTGAAACAACAACGTTTGGGTGGCAGGCAGGCGGGATGGAGCAAGGCCTCACGATACCGGCGGTTTGGACGGTGAACATGCTTGCGGAGTGGTGCTTGGGAGGGAGCTGCTTGGGTGCGTTGGAGGAGAGGGGGAGTGATCTTAGATGCGGGGTCCTGTGTGTGGAAAAGAGTGGGTAGCTTTGCATCGGTTTGATATTGGTGTTGATGGCGTTGATGATCTGACTGTCCAAATTAAAGAAAATGCGCCGTCGCGCAGGCGGTTTTCGTTGTAATGTATGACT # Right flank : TTATTAGCAGCGTCGAATCCCCGAAATTGGACGACGCGACTCCCCGTCGATGCGAACAGCAGCAAAAACAAGTGGGTTATCACTCACCGTTGCAGATTCCGGACGGGTCCGTGAATACGACGCGAACCGGTGGCAATGCGATAGAACCCATCATGGCGTGCATGTCCGAGGCAATCTCTCCATCATCAAAACACGGAAATCGTGTGCGATATGCTCATCCCAATGTTCTATCCCATAGAAAAGAAGGTGATCATGGCCCAGGAAGAAGAACGGCAGCTTGCTCTCCAAGCTCTCGCGATCATGACACCACATCTCAATGAAAAGCTGCGGGTTAGTCTTCAGGCCGACATCGATGCCGGCGAGCCATACGAGGCGCTCATCCCATTGGTGGGTGAGGCACCGAAGTATGGCGTGAGTCTACCTGAGGAACTGGTCCGGGCAACCATGGATATCGCCGAGCAGGACGATAAAGACGACCTCGGGGGAGTCTACGCTTACTA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCCCGCACTCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTGCCCCGCACGCGCGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //