Array 1 20-385 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLQC01000044.1 Streptococcus iniae strain QMA0446 NODE_34_length_30712_cov_91.0253_ID_10646, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 .................................... TGTTATATCTCCATGTTTGCAGTTGTGACT 86 36 100.0 30 .................................... TCTAATAGTGGAAGCCATGCGATCAGATAA 152 36 100.0 30 .................................... GTCGAAGTTGAGGTCAGCTTCAAAAATGTA 218 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 284 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 350 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.8 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : CTTACGGTCATAGTCAATAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 61297-63577 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLQC01000043.1 Streptococcus iniae strain QMA0446 NODE_9_length_63577_cov_87.082_ID_10524, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 61297 36 100.0 30 .................................... CAAATATTTAAGTATTTTTACGTGAAGGGG 61363 36 100.0 30 .................................... TTGTGTTCCGTCTGAAAGAACTAGTGTGTT 61429 36 100.0 30 .................................... TTTGAGAGTTCCACGCAGATATGATCTCGA 61495 36 100.0 30 .................................... TCAGCTAGCCATTCCTCTGTTAAGATTTGT 61561 36 100.0 30 .................................... AGCTCGTTTAGTTAAAAAGATAACTGATGA 61627 36 100.0 30 .................................... TTTGGTCTGGTATATACGACTTAGATATAT 61693 36 100.0 30 .................................... TTCTGGAATACCAACACCAGTTGCATATCT 61759 36 100.0 30 .................................... ACTCTCATATGTTGCATCAACTTCGCATTC 61825 36 100.0 30 .................................... ATGATGATCTAAGAAATGGTATTAGGAACA 61891 36 100.0 30 .................................... AATGTTTGACTTGTGTGTAGCCTATCAAAT 61957 36 100.0 30 .................................... GCCTACCTCTCCTTTTGAGTCAGCGGGTAT 62023 36 100.0 31 .................................... AGCTAAACTTGGAACAGTTACTTGGTCAGGA 62090 36 100.0 30 .................................... CAATATAGACACCCATGTAATCTTGATCGC 62156 36 100.0 30 .................................... ACTACTGCTTACATTTGGTACAGGCGCATT 62222 36 100.0 30 .................................... CTTGTATCCGTTGAGGATAAACTCCTTCGA 62288 36 100.0 30 .................................... ATCGATATATATGAGCAAAGGCCTAACGAT 62354 36 100.0 30 .................................... TTTATTATAATCGTAGCAGGTGACTAATAT 62420 36 100.0 30 .................................... ACCACTTATTGTAACTGTAGATGCCTACAT 62486 36 100.0 30 .................................... CCAAAAAAATGGGTGATGCTTCTAAAGGTT 62552 36 100.0 30 .................................... TTTAGAAATGACTGAATTACTAGACTTGAT 62618 36 100.0 30 .................................... TGAAGAGGGGATAGCAATTGGTGATAAAGA 62684 36 100.0 30 .................................... TTCGTTTGGCATTAAACTTGCAAATGATGT 62750 36 100.0 30 .................................... TACAAGCTGAGCACGTAGTCCGTTTATTTG 62816 36 100.0 30 .................................... TGCGCTCCTCGAGAGCAAGCAACTGCGCTT 62882 36 100.0 30 .................................... TTAAAACTTTCAAAGCCATCAATGTCACCA 62948 36 100.0 30 .................................... CGGCATCTGATAAAGAATACTTACGCATAA 63014 36 100.0 30 .................................... GCCGGCGCTTGTTCCGGCGCTTGTTGCCTC 63080 36 100.0 30 .................................... CCTGCGAATAATGAGGCATACATCTTCAAA 63146 36 100.0 30 .................................... CAACGTGACAACTGCAAACGGTGGAACACT 63212 36 100.0 30 .................................... ATTGTAGATATCCCATTCATCTTTTGTAAT 63278 36 100.0 30 .................................... ATTAAAAGTTGAGGTCGCACCTTATAACAC 63344 36 100.0 30 .................................... GAAGATGATTGTTTGGGCGTTATTTGATAG 63410 36 100.0 30 .................................... TATGTGACAGATTTTATTTACAGTGCAGTT 63476 36 100.0 30 .................................... GGTATTAATAACTTACGGTCATAGTCAATA 63542 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 100.0 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //