Array 1 3642243-3639344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061929.2 Salmonella enterica subsp. enterica serovar Albany strain R16.0556 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3642242 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 3642181 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 3642120 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 3642059 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 3641998 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 3641937 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 3641876 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 3641815 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 3641754 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 3641693 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 3641632 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 3641571 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 3641510 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 3641449 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 3641388 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 3641327 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 3641266 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 3641205 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 3641144 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 3641083 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 3641022 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 3640961 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 3640900 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 3640839 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 3640778 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 3640717 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 3640656 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 3640595 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 3640534 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 3640473 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 3640412 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 3640351 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 3640290 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 3640228 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 3640167 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 3640106 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 3640045 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 3639984 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 3639923 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 3639862 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 3639801 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 3639739 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 3639678 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 3639617 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 3639556 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 3639495 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 3639434 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 3639373 29 100.0 0 ............................. | A [3639346] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3660780-3658800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061929.2 Salmonella enterica subsp. enterica serovar Albany strain R16.0556 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3660779 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 3660718 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 3660657 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 3660596 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 3660535 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 3660474 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 3660413 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 3660352 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 3660291 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 3660230 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 3660169 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 3660108 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 3660047 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 3659986 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 3659925 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 3659864 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 3659803 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 3659742 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 3659681 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 3659620 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 3659559 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 3659498 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 3659437 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 3659376 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 3659315 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 3659254 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 3659193 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 3659132 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 3659071 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 3659010 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 3658949 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 3658888 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 3658827 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //