Array 1 1027732-1029411 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKIF01000002.1 Bordetella ansorpii strain H050680373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1027732 29 100.0 33 ............................. TTACTGGCGAGCGTGCTGATGAGCATTATCGGC 1027794 29 100.0 32 ............................. TTGTAGCCAGCCTCGCCGAACTGCCTCGCCAG 1027855 29 100.0 32 ............................. ACCATCAGTGACCTGCGCGAGGCCATGTTCGA 1027916 29 100.0 32 ............................. GCCTTCGAGCGCCTGGCCGGCATCCCGAAGCA 1027977 29 100.0 32 ............................. GAGTTGCAGCCGTGGATTCAGACGTTCCCGAC 1028038 29 100.0 32 ............................. CCCACCCCGCCAGACTCCGGCCAAGTCAACCA 1028099 29 100.0 32 ............................. ATGGTGATTTCGGCCATTGCGGCTCCTAGAAA 1028160 29 100.0 32 ............................. ACGCAGGAGGCTGTCTCGCTGGCGCAGAACAC 1028221 29 100.0 32 ............................. GGAGTAGCGCGGCGGCGGGCGCCCTGGATTTA 1028282 29 100.0 32 ............................. CGATGCGTTGCGGCTGGTGGTGAAGCTGGGCC 1028343 29 100.0 32 ............................. GAAGAGTACGGCAGGGAACTGATGGGCGCCGC 1028404 29 100.0 32 ............................. GGCGCGTGTGGAGTGCACATAGGGCGGGTCCA 1028465 29 100.0 32 ............................. CGCGATCCGGCCGGGGCGTAATAGTCGAAAAC 1028526 29 100.0 32 ............................. AATTCGAATTCCTCGCCCTTTTCGACAATCCG 1028587 29 100.0 32 ............................. CACGTGCCCAACGCCACCTGCAGCGCCTGGAT 1028648 29 100.0 32 ............................. TTCACGTCCTCATCGACCGGCGCGACGTCTAC 1028709 29 100.0 33 ............................. GACGACAGCCGCGTCTGCGACATCGATGAGCGC 1028771 29 100.0 32 ............................. TCAAAACGGCTGCTGGCCGCGTCCATGAGCCC 1028832 29 100.0 33 ............................. CCCGCTGCATAGCCGGTCGACGTCAGGGCTGCG 1028894 29 100.0 32 ............................. CGCCCCGGCGATGCCGCCATGTCTTGATGACC 1028955 29 96.6 32 ............................C GGCGATCAGGGCGGGGTATAGCGAGAAGACCG 1029016 29 100.0 32 ............................. GACGCATTGGCGAAACGCGGTGTTCCATCGCC 1029077 29 100.0 32 ............................. ACGATGGGCTGACCTGCGACCAGGCCATGCGA 1029138 29 100.0 32 ............................. GACTCATCCGGGAACGGCATGGCGCGGAAATC 1029199 29 100.0 32 ............................. TCATCAAGGCGAACGAGTGATGGATCTGGATA 1029260 29 100.0 33 ............................. AACTCGGCAGGCTCGGAGTACAGCCGGCCTTCA 1029322 29 100.0 32 ............................. ACGGGTTTACCAACGGCGACGCGATTGCCGGC 1029383 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TACAAGCTGGCCGCGAATTTCATGCTGGCGTGTGCGATCGAGACCTTCGGCGAAGCGGCGGCGCTGGTGTCCGGGCATGGCTCGGATGCGGCGTTGTTTCACGAGCTGATCACCAGCAGCATCCTGCCCGGGCCTGTGTACCAGGGGTACGGGAAGATGATTACCGAAGGGCGTTATGAGCCCGCGCTGTTCAAGGCCCGATTGGGGTTGAAGGACGTGCGGCTGGCGCTGGCGGCGGGGGAAGCGGTGAATACGCCGTTGCCGATGGGCAGTGTTGTGCGCGACAGCCTGATCGAGGCGGTTGCGCATGGGGATGGGGATAAGGATCTGGCGGCGTTGGGGAAAGTGGCGCAGCGCAGGGCGGGGCGAAAGGTCTGAGGATTTTTCGCTTTGCGAAGATCTGACTGATAGGGTGTTGATGCTGCCAAATTTTGGCAGGAAGAATCGGTAGATTTTTCGTGTCCGGAAATTTGCTTATTAAACAGTGGGTTATGAGAAGA # Right flank : GTCCTCTTCGGCCAGAATGCCGTGCATAGTGCCTTGACGCTCACGGTCCATCCGATCCTCTTCGGGCCCAATTCGAGGCGATTGGCACGAGGCAGTTTTCGCCTAGCGTCGAGTACTGCGCGGCGCTGGCCGAGTCGTTTCTTTCTTCATTGCCCAGCGGTATCGGCAAGCGCTAGCCGGCAGCAAAAAAATATCCCGAGCATCTTTCATGTAAATGAAACTTGATGTTTTTTATTTGACAAAATATTCCATGGTGAATTAGAAAGAAGGCGGCGAAGCGCCCGGTTTTCGATTCCGCTCGCCAGTCAATTGTCTGGCAACCGCTCCGAATCGGATTTATGGTGCTCGTTCCATCGACTTTCCCTGCATATCTGTCTGCCTATTGGGGTAAAGCTCGTCCTGAATCCGGGGGCGCTTCACCCTCATACCATCTGCTCGCTTATCACGCTCTCGACGTTGCTGCCGTCGCCGAAGCGTTGAGCCATTTACCCGCATTCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1041697-1042458 **** Predicted by CRISPRDetect 2.4 *** >NZ_FKIF01000002.1 Bordetella ansorpii strain H050680373, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1041697 29 100.0 33 ............................. ACTCTGGGCTTAAGCGGATATCAGAAATTCCCC 1041759 29 100.0 32 ............................. TCGATGCTCGCCATGGTACCCAGGATGAATGC 1041820 29 100.0 32 ............................. ACACGGTTTTGCACGGAAGAGCTGAAGCGCAA 1041881 29 100.0 32 ............................. CTTTCCTCGATTCTCTTCAGTCGCGCGGCCGG 1041942 29 100.0 32 ............................. ATCGTCGTCATGCCCGGGTTGTCCGGGTGCAG 1042003 29 100.0 32 ............................. ACCGGCCGAACGGCTTGGGCCTACGGCTTCAG 1042064 29 100.0 32 ............................. CGGCAACGTAACGGACTCGCCCTTTTGAGGCC 1042125 29 100.0 32 ............................. AGCGCGCCCATTACCATCCGATCTTTGATCGG 1042186 29 100.0 32 ............................. CCTTGAGCGTCGCCTTCAGTTGGGACACCTCG 1042247 29 100.0 32 ............................. CCCAGGCCGGCATGGCCAGCACGGTCTCGAGG 1042308 29 100.0 32 ............................. TCCGATTCGGCGGTCTACAGCATCCAGGCTGC 1042369 29 100.0 32 ............................. ATTACGTGGACGGCTACGAGCTGCGTGATGAT 1042430 29 82.8 0 .................C..C.A...T.A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 98.7 32 GCGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : GCGGATCAGATCAGCCAGGGGTGTCGGGGCGTTGTCCGGATACTTGGAGAAGTAAGCATCGCTGGCATGCCAAAGGGCTGTGGACCATGTCTTGTCCGCCGTATCCAGCGCCATGGCAGCAAAGCGAAACACACTGGCTTCTGCCTGCGATTGCGCCGTGTCGACGCGACCCAGCGCGCCGCTGATGCAACGGTCGAGTACAGCTTGTTCCAGGTCGCGAGCGGTCATGATGAAGCAGGGAGGCGAGGGGGCTCGAGAATTATGGCACTGGCCAACATGTTGGGATAGGGCAGGGACGTTTGGGCCCTCCCTCTCTGGGCGCTGGTTGGCTGTCGATTGCCCGGATTTTCAGATGGGGTTTTGGAGGGTAGATAGGGGTCTGGATCTGTCCTGGGAGAGCATCGTTGAACGTGGCTTTTGGATTGCAAATTTGTTGCTAAAGAATTGGTAGAATTTTTGGGGTGTAAATTTCTCTTTTAAAATAAGAGGTTATGCTAAGA # Right flank : AGTCACGACGCACTCACTGCGTTACCACCTGAAAACATCTCCCCCCACGCAGGCTGCCGTGGTCGTTGACTGGAGTTCAGCCCACTTGCTGAAGAATGCCGCCCGTATCCCCGTACGTCGTCGAGATCGAATTTCAGATCGGCCATGGATCCGGTAGCCTGCATAAGAGCCTCTGCGGCGCGATTCGACCTTCTCTCTTGCAGGCATGCAGCTTGCTGCCATCCCCCCGATCCATCCGGAGGTCTCCATGCCTGACTCTTCTTCCCCTGTCGCGGCCACGGGCGCGCTTGACGTCACCCTGCATGTCAACGGCACGACGCACGCCCTGCGGCTCGACCCGCGTGCCACGCTTTTGGACACGCTGCGCGAAACCCTGCACCTGACCGGCAGCAAGAAAGGCTGCGACCATGGCCAGTGCGGCGCCTGTACGGTGCATCTCGACGGCCGTCGCGTCAATGCGTGCCTGACGCTGGCGGCCGTGGCCGACGGCTGCCAGGTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //