Array 1 1369912-1371802 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066078.1 Rothia kristinae strain FDAARGOS_1001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1369912 36 100.0 37 .................................... GGTGGTATTCCGTGATGCGCTTGTACGGCACCTTCAC 1369985 36 100.0 36 .................................... CCGCAAGCAGGATTTTGACCAGTTCGCCCGGGCGGC 1370057 36 100.0 35 .................................... GGGAACATCTTCTTGGCGCCCTCGAAGGACCCGTT 1370128 36 100.0 35 .................................... CAGCGCATCGGGTGGTTCCACGACGGGGTGACCGC 1370199 36 100.0 35 .................................... TGGCGGCATCATGCTGATCTACGGGTCAACCGGGC 1370270 36 100.0 35 .................................... CGGCCACCAGGGACGCCAACGGGTTGAACTGGTCA 1370341 36 100.0 34 .................................... CCGACGCCGGTGCTGAATCGGAGCCGACCGGACT 1370411 36 100.0 36 .................................... TCGACCGCGAACCCGGACACCCTGCGGGCCGTCTTC 1370483 36 100.0 35 .................................... CTGGTGCTTGCCACGATCGTGCGGGACCCGTCCCA 1370554 36 100.0 34 .................................... TTTCAGCGGGAACTCTGAGGGTGTGGGAGGGACG 1370624 36 100.0 34 .................................... CGGCACATCACTGGGGCGGCGACCCCAAAGGTGA 1370694 36 100.0 36 .................................... TTCGACGACGGCCAGCGGGAGCCCGTTGCTCCCCCA 1370766 36 100.0 38 .................................... GGGTTCGATCACAGGTCGGGCAGGGCCTCCTGGGGGTC 1370840 36 100.0 35 .................................... ATCACGGTGCTCAGGGCGCATATCGAGGGTCGGCT 1370911 36 100.0 35 .................................... AAGGCCGGATCATCAGGGGACATCAGCCGGCCCAC 1370982 36 100.0 35 .................................... TCGACACCATCCACCAGGAACCGGTCCTGCTCGCT 1371053 36 100.0 35 .................................... CGGCGCCACCTGCGCCACCACGAGACCCCCTGCGA 1371124 36 100.0 36 .................................... GAAGGGTTGAGGGCCGGGCGCGACGAGGGGATCCCT 1371196 36 100.0 35 .................................... CAGCTCGTGCTGAGCACCGAGGGACACGCGACGGA 1371267 36 97.2 36 .................................A.. CGGCACCGGTTGTGCCAGCGGTGTTGGAGAACAGGT 1371339 36 100.0 35 .................................... GCGCACTACCGGTGCCGGTGCCCTGAGTGCCGGGA 1371410 36 100.0 35 .................................... CAAGGAGGTTGCCTGTGGACAACGCACGTCGTCGA 1371481 36 100.0 34 .................................... GGGCCGCGGGAGGGGCCGCGATGCACGAACGAGC 1371551 36 100.0 36 .................................... GACGACGCCTGGGCCGCGCCCCCGAGCAACCCGTGG 1371623 36 97.2 36 .G.................................. CCCCTGAGATCTGGTCCGCGTGCCTGCCGTGCCTGG 1371695 36 97.2 36 ..................A................. CGGGTTCAGGTAACCCGCGCCATTCCTGGGAATCGT 1371767 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ====================================== ================== 27 36 99.6 35 CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Left flank : CCGGGATGACGTCCGCCGGTATCTCGTCACCTATGACGTGGCTCAGGACCGGCGCCGGACACGGCTGGCGAAGGAGTTGGAGCACTACGGGGATAGGATCCAGTACAGCGTGTTCCTGTTCGACGTCTCACCGGCGGCGATGCTGCGATTGAAGACGGAGATCCTGGATCTGGTGGATGTGGGTGAGGATTCCGTGCTGATCTGCGACCTGGGGCTGAAGTCCGAGGTCTCCGACAAGAACTTCCAGTACCTGGGAGTGGAGCGTCCGATCACGGACGACTCCGTGATGATCTTCTGACGGCCCTGGTGCGTACTCGAGGAACCGCGAGCGCTCCGGCGGTAGCGGATCCTCGGCGAGCCGTCGCGCCACTGCTTTCCCCGGTATTCCGCGGCGGAGCGCCCCATCCCGGGGTGACACGGCCGGCTTCCGCTAGGCTGTGGAGCGAGCGCTCGCATGACCCTCGGTTTCCCATAGTCAGACCGCGTCAATTTCGGTCAGG # Right flank : AAATGTCGACGCCGAGGTGCAGGTAGCACGCGACCCACGCTCCCCTTCAGGGGGAGGCCTTCGCCCGCTCCAACAGCCGGACGCACCTCAGGCATCGTCGATGTCCGCCACAGTAGAATCGAAGCCACAACGACGTGCGCCACCGAGCAAGGAGCGATCAGCGATGGTCCGCCTCAGCGACCTCATCTCCGTCCCAGCGATCCGCTTGGAGGTCGATGCCGAGGACTGGCGCAGCGCCATCCAGCACACCGGAGCGCTCTTGGCCGACGTCGGCGTCGCCGGGCCGTCCTACACCCAGGCCATGGTCGACGTCGTCGAGGAGCACGGGCCGTACATCGTCATCACGCCCGGCTTCGCCCTGGCTCATGCCCGACCGGACGCCTCGGTGACCGCCACCGGCCTGTCCTTCGTCCGCCTGGCCGCACCCGTCCGTTTCGGTCACGCCTCCAACGACCCCGTCACCATCGTGATGGCGCTGACCGCACAGGACCCTGGCGCCC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCTCCCCTTCGTGGGGAGGCCTTCGTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //